RNA id: XM_039779213.1


Basic Information

Item Value
RNA id XM_039779213.1
length 2422
RNA type mRNA
GC content 0.56
exon number 16
gene id mctp1b
representative True

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 31303145 ~ 31402967 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGGTTCCCAAACAGGTAACGTTAGGGCGGGCCCTGCTGCTGTCTCCCCCCCGCCTCGTGTTGTTAAATATCTCGACGAAAAAGGGGCTGGACAACCCCCCCGACTACCAGCGGGGAAGCCACGACATGTGTCCagtgtttatgtgttttttcTCGGTGTAATGTAGCCGAGTAGGGACAGGGTTAAGCGGTAAATCCATCGGTGTGTGTGACCGTTGGTTTGGGCTCCGAGCAGAGCAGACTCGGGAATGGAGCAGAGCGAAGGGGACGAGAATGAGAGCGGCTCCTCGTCCCAACAAAATACGATGTGGAAACAGTTTCAAGCCAAAGCCAAGCCGCTGCTGAGCCCCAAGCTGGGCTCCAGAGACCccgaggagaagaaggagaagggcGTGTGGATGTTCAAGAAGATGAAATGGAAGGAAAACGTCGCGCTGGACCGGGTGATCTCCTCCTCGCAGCCCGACCTGCTCTTCTCCTCTCAGGTGGATGTGGAGACGAAGGACTCGAAGGAGGCGCAACTCTGCGGCAAAGCGGCCGGGAGCGGGCTCGGCAGGGAGAAGCTGCCGTCGCACAAGTCCGCCAGCCCGAAGAAGCCCACGGTGGCTCAACTGGTGCAGTCCCACCACAAGAGCTCTTCTCTCGGGTCAGCGTGCCTGGAGAGGCTGGCCGAACCCCCGTGCGGCGGCCGCGGCGAAGGAGGCGGCGGCGGCAGCGAAGGAGGCGAAGCGGCAGTTGCCGCAGCAACAGAAACACCGCTGGAGAGCAGCGATGAACAGCCGGGTACGGCTGCTCCATGCTCCTCGGGGGTCACGTCCGAGCGAGCCGTCCCCAGCTCAGGGATGTACAAGCTGGACATTGAGCTGAAGAGAGGACACAATCTGGCcgtcagagacagaggagGCAGCAGTGATCCGTATGTCAAGTTCAAGCTCGCTGGAAAAGAGGTGTTCAGAAGCAAAACCATCCACAAAAACCTCAACCCAGTGTGGGACGAGAAAACAACTCTAATAATGGACTGTCTGAGTGACCCGCTGTATGTAAAGGTGTTTGACTACGACTTTGGCCTTCAAGACGACTTCATGGGTTCTGCTTACCTCTACCTTGAGTCTCTCGAGCAGCAGAGgaCGATACCTGTAACTCTGGTGCTGACGGACTCGCAGCACCCGGATCAGGACCTGGGCACCCTGGAGCTGGCCGTCACCCTGACACCTAAAGACAGTCCCATAGAGGAGCGAAGAGACTCAACCCAGAGACAGGTTATGAAGTATCGGTGGAAGCCGTATGTGAATAAAACCATGCTGCTCAGGAGGTCCTGGAAACGATCCACAAAGcagcagcagtcaatgcGTCTCTCTGAGCTGCATCGGAAATCGCAGCTGTGGCGAGGGATCGTCAGCATCGCGCTGATCGAAGGCCGGAACCTGATCCCCATGGACCCCAACGGTCTGAGTGACCCGTACGTCAAGTTCAGACTGGGACCCCAGAAATACAAGAGCAAGaCGGTGCCAAAGACCCTGAGTCCCCAGTGGAGGGAGCAGTTTGACCTCCACCTGTacgaagagagcggaggagttTTGGAGATCACGGTGTGGGACAAAGACACGGGGAGGAGAGACGACTTCATCGGACGCTGCCAGTTGGACCTCTCCACTCTGTCCAAGGAGCAAACTCATCACCTGGAGCTGGCCCTCGAGGAGTCCCGGGGCTACGTGGTGCTGCTGGTCACGCTGACCGCCTCGGCGCACGTCTCCATCGCCGACCTGTCCGTCACACCGCTGGACGACCCGCTAGAGCGCCGGGAGATACTCAAGCGATACGGTGTGATGAAGTCGTTCTCTAACTGGAGAGACGTGGGCATCGTGCAGGTGAAGGTGATGAGAGCCGAAGGACTCATGGCTGCCGACGTTACCGGAAAGAGCGATCCCTTCTGTGTGTTGGAGCTGAATAACGACCGGCTGCAGACTCATACGGTTTACAAGAACCTGAATCCCGAGTGGAACAAAGTCTTCACCTTCAACGTTAAAGACATTCACTCGGTGCTGGAGGTGACGGTGTTTGACGAGGACAGAGACCGGAGCGCTGACTTCCTGGGGAAAGTGGCCATCCCGTTGTTACATATCCGTAACGGTGAGCAgaagagctacgtgttgaaaaaTAAGGAGCTGACAGGACCGACTAAAGGAGTCATCTACCTGGAGATAGATGTCATCTACAACACTTTTAAAGCTGCTTTAAAGACTGTTGTCCCTGCAGAGCAGAAATACATCGAGGAAGAACCAAAAGTGTCCAAGCAGttGCTCCAGCAGAACTTTAACCGTGTGAAGAGGTGCATCATGGTCCTGATCAGCTACGGGACGTTTATCAACAGCTGCTTCGAGTGGGAGTCTGCGCAGAGAAGCATCGTCTCCTTTGTGGTATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU242906 lncRNA upstream 4689 31297632 ~ 31298456 (+) True G179405
TU242776 lncRNA upstream 18780 31283948 ~ 31284365 (+) True G179308
TU242762 lncRNA upstream 24807 31236575 ~ 31278338 (+) True G179298
TU242765 lncRNA upstream 24807 31277570 ~ 31278338 (+) False G179298
TU242757 lncRNA upstream 59495 31189005 ~ 31243650 (+) False G179293
TU242957 lncRNA downstream 103 31403070 ~ 31403841 (+) True G179430
TU242918 lncRNA downstream 11100 31414067 ~ 31462608 (+) False G179407
TU242908 lncRNA downstream 11311 31414278 ~ 31462608 (+) False G179407
TU242921 lncRNA downstream 11381 31414348 ~ 31462731 (+) False G179407
TU242960 lncRNA downstream 13964 31416931 ~ 31423163 (+) True G179433
XM_039780642.1 mRNA upstream 63107 31203749 ~ 31240038 (+) False sept5b
XM_039780640.1 mRNA upstream 63108 31202551 ~ 31240037 (+) False sept5b
XM_039780641.1 mRNA upstream 63108 31203279 ~ 31240037 (+) True sept5b
XM_039780639.1 mRNA upstream 63108 31203749 ~ 31240037 (+) False sept5b
XM_039780195.1 mRNA upstream 150978 31126459 ~ 31152167 (+) True acads
XM_039779066.1 mRNA downstream 25200 31428167 ~ 31458606 (+) True LOC120545075
XM_039779231.1 mRNA downstream 198858 31601825 ~ 31645660 (+) False LOC120545154
XM_039779232.1 mRNA downstream 223275 31626242 ~ 31645660 (+) False LOC120545154
XM_039780871.1 mRNA downstream 395264 31798231 ~ 31800033 (+) True LOC120546097
XM_039778811.1 mRNA downstream 427356 31830323 ~ 31832260 (+) True LOC120544927
XR_005636691.1 other upstream 992251 30264383 ~ 30310894 (+) True zmiz2
TU242148 other upstream 1280928 30021319 ~ 30022217 (+) True G178881
TU242149 other upstream 1280928 30021319 ~ 30022217 (+) False G178881
TU242091 other upstream 1507831 29794144 ~ 29795314 (+) False LOC120545429
TU242100 other upstream 1559070 29742623 ~ 29744075 (+) True G178845
TU243294 other downstream 676210 32079177 ~ 32099542 (+) True G179655
TU243292 other downstream 686461 32089428 ~ 32092131 (+) False G179655
TU243298 other downstream 686461 32089428 ~ 32099542 (+) False G179655
TU243411 other downstream 1039088 32442055 ~ 32448815 (+) True LOC120545732
TU243616 other downstream 1561994 32964961 ~ 32984052 (+) True LOC120545086

Expression Profile