RNA id: TU242908


Basic Information

Item Value
RNA id TU242908
length 294
lncRNA type sense_over
GC content 0.40
exon number 2
gene id G179407
representative False

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 31387747 ~ 31480094 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tgtggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgacagGGTCTAGAGAAAAAGCACAACTCCGACCAACCAACAAGAACCACAAGTCGCCTGTCGATCTAAAGCTTCTCCTCCGCTGTcgtcttctcttcttctcttaaACACTGAtgttaagaagctttgtgctcgcggaaataaaaaaaaaggcaaaagcataaaaagataaaaatgttTACAGATGAATATATCAAAATTTGAGAATGTTGTTCAAACGTGACTTCTTCCACCTAAAACTTCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU242957 lncRNA upstream 10437 31403070 ~ 31403841 (+) True G179430
TU242906 lncRNA upstream 115822 31297632 ~ 31298456 (+) True G179405
TU242776 lncRNA upstream 129913 31283948 ~ 31284365 (+) True G179308
TU242762 lncRNA upstream 135940 31236575 ~ 31278338 (+) True G179298
XR_005636629.1 lncRNA downstream 1392 31464000 ~ 31495305 (+) False LOC120545160
TU242965 lncRNA downstream 1406 31464014 ~ 31495420 (+) True LOC120545160
TU242979 lncRNA downstream 24058 31486666 ~ 31509005 (+) True G179445
TU242970 lncRNA downstream 59273 31521881 ~ 31522378 (+) True G179441
TU242992 lncRNA downstream 102637 31565245 ~ 31653583 (+) True LOC120545154
XM_039779213.1 mRNA upstream 11311 31303145 ~ 31402967 (+) True mctp1b
XM_039779214.1 mRNA upstream 11311 31303145 ~ 31402967 (+) False mctp1b
XM_039780642.1 mRNA upstream 174240 31203749 ~ 31240038 (+) False sept5b
XM_039780641.1 mRNA upstream 174241 31203279 ~ 31240037 (+) True sept5b
XM_039779231.1 mRNA downstream 139217 31601825 ~ 31645660 (+) False LOC120545154
XM_039779232.1 mRNA downstream 163634 31626242 ~ 31645660 (+) False LOC120545154
XM_039780871.1 mRNA downstream 335623 31798231 ~ 31800033 (+) True LOC120546097
XM_039778811.1 mRNA downstream 367715 31830323 ~ 31832260 (+) True LOC120544927
XM_039778889.1 mRNA downstream 379517 31842125 ~ 31844197 (+) True LOC120544976
XR_005636691.1 other upstream 1103384 30264383 ~ 30310894 (+) True zmiz2
TU242148 other upstream 1392061 30021319 ~ 30022217 (+) True G178881
TU242149 other upstream 1392061 30021319 ~ 30022217 (+) False G178881
TU242091 other upstream 1618964 29794144 ~ 29795314 (+) False LOC120545429
TU242100 other upstream 1670203 29742623 ~ 29744075 (+) True G178845
TU243294 other downstream 616569 32079177 ~ 32099542 (+) True G179655
TU243292 other downstream 626820 32089428 ~ 32092131 (+) False G179655
TU243298 other downstream 626820 32089428 ~ 32099542 (+) False G179655
TU243411 other downstream 979447 32442055 ~ 32448815 (+) True LOC120545732
TU243616 other downstream 1502353 32964961 ~ 32984052 (+) True LOC120545086

Expression Profile