ogdhb (ogdh)


Basic Information

Item Value
gene id ogdhb
gene name ogdh
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 30190270 ~ 30228617 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039779692.1
ATGCACCGCTTAAGGACTACAGTTGCAAGGCTTCGGCCTTTAACGGCTGCACAGACAGCCCAGAGCCTATCACAGCCCAGGCTGTTGGCGATCGAAGGGGGATTAAGGACGTTTAAGCCCGTGATGCGCCTGAACACTTCTGTGGCGGCTGAGCCCTTTCTTAATGGCACCAGCTCCAACTATGTGGAGGAGATGTACTATGCGTGGCTGGAGAATCCCAAGAATGTGCACAAGTCCTGGGATATTTTTTTCCGTAACGCTAACGCTGGGGCTCCGCCCGGTGCGGCCTACCAGAGCCCTCCACCCCTCATTGGGTCTTCTCAGGGACTGGCCAGTGCCCGGGGACTGGTGGGGGCTAAACCGAATGTGGAGAAACTGGTGGAGGATCATCTAGCAGTTCAATCACTCATACGAGCATACCAGGTGCGAGGGCATCACATAGCCAAGTTGGACCCCATGAACATCAGCTGTGTAGACTTTGACGATGCGCCGTGTGCCATTGGTTTCCAGAACGTTGGTTTTTACGGGCTGGTTGAATCCGACTTGGACAAGGTGTTCCGGCTTCCCACGACCACCTTCATCGGTGGCAGCGAGGGCTCTTTGCCTCTCAGAGAGATTATACGACGTTTGGAGATGGCCTACTGTCAACATATTGGAGTAGAGTTTATGTTCATTAACGACATGGAGCAGTGCCAGTGGATCAGACAGAAGTTTGAGACCCCGGGAGTCATGCAGTTCAGTCTGGAAGAAAAGAAGACACTTCTGGCCCGAATGATCCGATCCACAAGGTTCGAGGAGTTCCTCCAGAGGAAGTGGTCTTCGGAGAAGCGGTTCGGTCTGGAAGGCTGCGAATCGCTCATCCCGGCCCTCAAGACGATCATCGACAAGTCCAGTCAGCGCGGAGTGGAGAGTGTGATCATGGGCATGCCTCACAGAGGGAGGCTGAATGTGCTGGCTAACGTGATCCGCAAGGAGCTGGACCAGATCTTCTGCCAGTTTGACTCTAAACTAGAGGCTGCTGATGAGGGTTCTGGTGACGTGAAATATCACTTGGGGATGTATCACAAGAGGATGAACCGGGTCAGCGACCGGGAAATCACGATGTCGCTCATGGCGAACCCGTCCCACCTGGAGGCAGTGGACCCGGTGGTGCAGGGAAAGACCAAAGCCGAGCAGTTCTACTGCGGAGACACCGAGGGCAAGAGGGCGATGTCCATTCTGATTCACGGCGACGCTGCGTTTGCAGGCCAGGGTATCGTGTACGAGACGTTCCACCTGTCTGACCTGCCGTCCTACACCACGCATGGCACCATACACGTGGTGGTCAACAACCAGATCGGTTTCACCACAGATCCCAGGATGGCGCGTTCATCTGCTTATCCTACAGATGTCGCACGGGTCGTCAACGCTCCCATCTTCCACGTCAACGCAGACGACCCCGAGgctgtggtgtatgtgtgtgaagtaGCAGCTGAATGGAGGAACACCTTCCATAAAGATGTAGTCGTAGACCTGGTTTGTTACAGACGCAACGGGCACAACGAGATGGACGAGCCGATGTTCACGCAGCCGCTGATGTACAAGCAGATCAAGAAGCAGAAAGGGGTCCTGCAGCAGTTTGCTGGAAAATTAATCGCAGAGGGAGTCATCACAACACAAGCCTATGAGGAGGAAGTTGCGAGGTACGACAAAATCTGCGAGGATGCTTACGCTCGCTCCAAAGATGAGAAGATCCTTCACATCAAACACTGGCTAGACTCCCCATGGCCTGATTTTTTCACAAAGGAGGGACAGCCCAAAAGTATGAACTGCCCTTCGACTGGCATCCGTGAAGAAGAACTCAACCATATTGGAAACATTGCTGCCTCCGTCCCAGAGGAAGACTTCACGATACACGGAGGTTTGAGTCGCATCCTAAAGGGCCGCGCAAATATGGTGAGTCAACGATTGTGCGACTGGGCTCTCGGGGAATACATGGCCTTCGGCTCTCTGCTCAAAGAAGGGATCCACGTACGCCTTAGTGGACAGGATGTGGAGAGGGGCACGTTCAGCCATCGCCACCATGTTCTTCACGACCAGAACGTTGATAAGAGGATCTGCATCCCAATGAACTACGTCTCGCCCGATCAAGCTCCTTACACTGTCTGCAACAGCTCTCTGTCGGAGTACGGAGTCCTGGGTTTTGAGTTAGGCTTTGCCATGGCCAGTCCCAACGCGCTGGTGCTGTGGGAGGCCCAGTTCGGAGACTTCCATAACACAGCTCAGTGCATCATCGACCAGTTCATCAGCTCGGGCCAGGCCAAGTGGGTGAGACAGAACGGCATTGTGCTGCTGCTTCCTCACGGCATGGAAGGAATGGGTCCAGAGCACTCGTCTGCCCGCCCTGAAAGGTTTCTACAGATGTGCAATGATGATCCTGATGTTTTCCCTAAACTGTCAGAGGACTTTGCAGTGCGTCAGCTGTACGACTGTAACTGGATCGTTGTCAACTGCTCTACTCCGGCAAACTACTTCCACGTCCTCCGCAGACAGATCCTGCAGCCCTTCAGGAAGCCtCTGATCGTGTTTACTCCCAAGTCGCTGCTGCGCCATCCTGAGGCCAAGTCCAGCTTTGATCACATGCTGCCAGGCACACACTTCATGCGTATAATCCCAGAGGACGGGCCTGCAGCGGCCAGCCCAGAGAAGGTGAAGAGAATCGTTTTCTGCACCGGCAAGATCTACTATGAACTCGCCCGTGAACGCAAGAACAGAGGCATGGACGACGCCGTAGCTGTCATCCGTGTCGAACAGctcTCGCCCTTCCCGTTTGATCTGGTGAAAGCAGAGACCGAGCGTTATCCAAACGCTGATCTGGTGTGGTGTCAGGAAGAGCACAAGAACCAGGGCTACTACGACTACGTCAAGCCCCGCATCCGCACCACCATCAACCGCAGCCGCCCCGTCTGgtaTGCTGGACGTGACccggcagcagctccagctaCCGGAAACAAGCCGACTCACCTCGCGGAGCTGCAGCGTTTACTGGACACGGCGTTCGATCTGGAAGCGTTTGCGGGACAAGTTTAACAActccactctctccctctcatctgTCGAGCCTCCTCTGACTTTACCTTTTTGAGGCAAAGTCACTTtgcattgatgtgtttttttttctcaatataTTTACACATCAGACCGGTTCTCAGGCGTcctctttaacccttgtgttgtcttcccgtcaaccttgaaaaaaacactttgttttccaacgtttttgacgcctttttttgtttttgctttttccaacgttttaaattgtaaaatttttctcagcgcttatttctacatcccatattttatgatagaaaacaaaaattggaaacgggtcaatttgacccgaagtcaacacaagggttaaacttaATGCACAATGACTTCAAACACTGTTACCATGAATACCTCGTGTTCACAGTGACACTTTTTATAGGCGAATGTTAAGTTAACCTGCATTGAATGTATGAATTTATACAAAAGTTAATTTGTAAGAAAACAAGTTTTAtcttcattttttcatttgctTTCATTTTGTTAATTACAAAATCATTTTGTGCCTGCTCTGCATGTTGCAGAATCGACCGAAATACTCGATGCAACCACCTGCTGAACAAATACTTGAATAGTTAACAGatctgaaatgtaaaaaaaaaaaaaaaaacaatcaaccaAATCTGTtaaccagcacctctaaagcgcCGATTAAAGCCCCTACAAGGCGTTTTTAACTG
>XM_039779693.1
acacccacacacacacagctctcccgctgctgcagcacacacacacacacacacacacacacacacacacacacacacacacgctgcatCGTGCTCGCGAGTCGCGCTATCAGCTCAcgggacaggacaggacagtgcTGCTGAGTCTGCTCCTTGTTTACTACAGCTGTGGAAAGAGAGCCACGCGGGCGCCAGGAAAAGGTTCAGCGGGATCCAGTGGATGATCGGCAGAAGAGACGTAGCAGGAGCTGTATAGTAGCGAGCGTCATCGGTTCAACCAAAccggagcagtgagaggagcagctGCTGAGGAGCGTCGAGGGTCTCCTTGTCCTGGACACTGCTGCTATATATCTTTTCCCCCAGCAAGGGACGGAAGGAGAGGAGCTGTGGCTGATCTGCAGCCATGCACCGCTTAAGGACTACAGTTGCAAGGCTTCGGCCTTTAACGGCTGCACAGACAGCCCAGAGCCTATCACAGCCCAGGCTGTTGGCGATCGAAGGGGGATTAAGGACGTTTAAGCCCGTGATGCGCCTGAACACTTCTGTGGCGGCTGAGCCCTTTCTTAATGGCACCAGCTCCAACTATGTGGAGGAGATGTACTATGCGTGGCTGGAGAATCCCAAGAATGTGCACAAGTCCTGGGATATTTTTTTCCGTAACGCTAACGCTGGGGCTCCGCCCGGTGCGGCCTACCAGAGCCCTCCACCCCTCATTGGGTCTTCTCAGGGACTGGCCAGTGCCCGGGGACTGGTGGGGGCTAAACCGAATGTGGAGAAACTGGTGGAGGATCATCTAGCAGTTCAATCACTCATACGAGCATACCAGGTGCGAGGGCATCACATAGCCAAGTTGGACCCCATGAACATCAGCTGTGTAGACTTTGACGATGCGCCGTGTGCCATTGGTTTCCAGAACGTTGGTTTTTACGGGCTGGTTGAATCCGACTTGGACAAGGTGTTCCGGCTTCCCACGACCACCTTCATCGGTGGCAGCGAGGGCTCTTTGCCTCTCAGAGAGATTATACGACGTTTGGAGATGGCCTACTGTCAACATATTGGAGTAGAGTTTATGTTCATTAACGACATGGAGCAGTGCCAGTGGATCAGACAGAAGTTTGAGACCCCGGGAGTCATGCAGTTCAGTCTGGAAGAAAAGAAGACACTTCTGGCCCGAATGATCCGATCCACAAGGTTCGAGGAGTTCCTCCAGAGGAAGTGGTCTTCGGAGAAGCGGTTCGGTCTGGAAGGCTGCGAATCGCTCATCCCGGCCCTCAAGACGATCATCGACAAGTCCAGTCAGCGCGGAGTGGAGAGTGTGATCATGGGCATGCCTCACAGAGGGAGGCTGAATGTGCTGGCTAACGTGATCCGCAAGGAGCTGGACCAGATCTTCTGCCAGTTTGACTCTAAACTAGAGGCTGCTGATGAGGGTTCTGGTGACGTGAAATATCACTTGGGGATGTATCACAAGAGGATGAACCGGGTCAGCGACCGGGAAATCACGATGTCGCTCATGGCGAACCCGTCCCACCTGGAGGCAGTGGACCCGGTGGTGCAGGGAAAGACCAAAGCCGAGCAGTTCTACTGCGGAGACACCGAGGGCAAGAGGGCGATGTCCATTCTGATTCACGGCGACGCTGCGTTTGCAGGCCAGGGTATCGTGTACGAGACGTTCCACCTGTCTGACCTGCCGTCCTACACCACGCATGGCACCATACACGTGGTGGTCAACAACCAGATCGGTTTCACCACAGATCCCAGGATGGCGCGTTCATCTGCTTATCCTACAGATGTCGCACGGGTCGTCAACGCTCCCATCTTCCACGTCAACGCAGACGACCCCGAGgctgtggtgtatgtgtgtgaagtaGCAGCTGAATGGAGGAACACCTTCCATAAAGATGTAGTCGTAGACCTGGTTTGTTACAGACGCAACGGGCACAACGAGATGGACGAGCCGATGTTCACGCAGCCGCTGATGTACAAGCAGATCAAGAAGCAGAAAGGGGTCCTGCAGCAGTTTGCTGGAAAATTAATCGCAGAGGGAGTCATCACAACACAAGCCTATGAGGAGGAAGTTGCGAGGTACGACAAAATCTGCGAGGATGCTTACGCTCGCTCCAAAGATGAGAAGATCCTTCACATCAAACACTGGCTAGACTCCCCATGGCCTGATTTTTTCACAAAGGAGGGACAGCCCAAAAGTATGAACTGCCCTTCGACTGGCATCCGTGAAGAAGAACTCAACCATATTGGAAACATTGCTGCCTCCGTCCCAGAGGAAGACTTCACGATACACGGAGGTTTGAGTCGCATCCTAAAGGGCCGCGCAAATATGGTGAGTCAACGATTGTGCGACTGGGCTCTCGGGGAATACATGGCCTTCGGCTCTCTGCTCAAAGAAGGGATCCACGTACGCCTTAGTGGACAGGATGTGGAGAGGGGCACGTTCAGCCATCGCCACCATGTTCTTCACGACCAGAACGTTGATAAGAGGATCTGCATCCCAATGAACTACGTCTCGCCCGATCAAGCTCCTTACACTGTCTGCAACAGCTCTCTGTCGGAGTACGGAGTCCTGGGTTTTGAGTTAGGCTTTGCCATGGCCAGTCCCAACGCGCTGGTGCTGTGGGAGGCCCAGTTCGGAGACTTCCATAACACAGCTCAGTGCATCATCGACCAGTTCATCAGCTCGGGCCAGGCCAAGTGGGTGAGACAGAACGGCATTGTGCTGCTGCTTCCTCACGGCATGGAAGGAATGGGTCCAGAGCACTCGTCTGCCCGCCCTGAAAGGTTTCTACAGATGTGCAATGATGATCCTGATGTTTTCCCTAAACTGTCAGAGGACTTTGCAGTGCGTCAGCTGTACGACTGTAACTGGATCGTTGTCAACTGCTCTACTCCGGCAAACTACTTCCACGTCCTCCGCAGACAGATCCTGCAGCCCTTCAGGAAGCCtCTGATCGTGTTTACTCCCAAGTCGCTGCTGCGCCATCCTGAGGCCAAGTCCAGCTTTGATCACATGCTGCCAGGCACACACTTCATGCGTATAATCCCAGAGGACGGGCCTGCAGCGGCCAGCCCAGAGAAGGTGAAGAGAATCGTTTTCTGCACCGGCAAGATCTACTATGAACTCGCCCGTGAACGCAAGAACAGAGGCATGGACGACGCCGTAGCTGTCATCCGTGTCGAACAGctcTCGCCCTTCCCGTTTGATCTGGTGAAAGCAGAGACCGAGCGTTATCCAAACGCTGATCTGGTGTGGTGTCAGGAAGAGCACAAGAACCAGGGCTACTACGACTACGTCAAGCCCCGCATCCGCACCACCATCAACCGCAGCCGCCCCGTCTGgtaTGCTGGACGTGACccggcagcagctccagctaCCGGAAACAAGCCGACTCACCTCGCGGAGCTGCAGCGTTTACTGGACACGGCGTTCGATCTGGAAGCGTTTGCGGGACAAGTTTAA

Function

symbol description
ogdh Enables oxoglutarate dehydrogenase (succinyl-transferring) activity and thiamine pyrophosphate binding activity. Involved in 2-oxoglutarate metabolic process; histone succinylation; and succinyl-CoA metabolic process. Located in mitochondrion and nucleus. Part of oxoglutarate dehydrogenase complex.

NR:

description
LOW QUALITY PROTEIN: 2-oxoglutarate dehydrogenase, mitochondrial-like

GO: NA

KEGG:

id description
K00164 OGDH, sucA; 2-oxoglutarate dehydrogenase E1 component

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039779692.1 True 3770 mRNA 0.51 22 30192551 30228617
XM_039779693.1 False 3475 mRNA 0.55 23 30190270 30227916

Neighbor

gene id symbol gene type direction distance location
LOC120545415 camk2b,LOC102196557,LOC101473593 coding upstream 12573 30120357 ~ 30177697 (+)
nudcd3 nudcd3 coding upstream 74724 30108774 ~ 30115546 (+)
gnsb gns,LOC104931705,LOC103374629 coding upstream 102250 30061600 ~ 30088020 (+)
il1b NA coding upstream 225022 29951452 ~ 29965248 (+)
LOC120545406 cnnm3 coding upstream 265005 29895677 ~ 29925265 (+)
ppiab ppia,LOC104934128,LOC104948019 coding downstream 87842 30316459 ~ 30322003 (+)
LOC120545413 NA coding downstream 104690 30333307 ~ 30335753 (+)
LOC120545426 LOC103129635,LOC106953379,LOC106904245,LOC107386157,LOC105916632,LOC103470758,LOC100699155,LOC102206240,LOC102305468 coding downstream 110093 30338710 ~ 30344803 (+)
ddx56 ddx56 coding downstream 153364 30381981 ~ 30399109 (+)
ash2l ash2l coding downstream 221820 30450437 ~ 30466212 (+)
G178896 NA non-coding upstream 6794 30088279 ~ 30183476 (+)
G178910 NA non-coding upstream 33492 30156365 ~ 30156778 (+)
G178907 NA non-coding upstream 65059 30124638 ~ 30125211 (+)
G178902 NA non-coding upstream 81715 30106993 ~ 30108555 (+)
G178882 NA non-coding upstream 166791 30023031 ~ 30023479 (+)
G178918 NA non-coding downstream 6601 30235218 ~ 30275572 (+)
G178933 NA non-coding downstream 136143 30364760 ~ 30368909 (+)
G178934 NA non-coding downstream 146197 30374814 ~ 30375165 (+)
G178950 NA non-coding downstream 195336 30423953 ~ 30430650 (+)
LOC120544906 NA non-coding downstream 347692 30576309 ~ 30577206 (+)
G178881 NA other upstream 168053 30021319 ~ 30022217 (+)
LOC120545429 LOC104948058 other upstream 394445 29793804 ~ 29795825 (+)
G178845 NA other upstream 439975 29742623 ~ 29750295 (+)
rasgrf2a NA other upstream 523039 29601531 ~ 29667231 (+)
G178529 NA other upstream 1097944 29084949 ~ 29092326 (+)
zmiz2 zmiz2 other downstream 30749 30259366 ~ 30310894 (+)
LOC120545414 LOC106676976 other downstream 95495 30324112 ~ 30331614 (+)
G179407 NA other downstream 1159130 31387747 ~ 31480094 (+)
LOC120545154 hapln1,LOC101070352,LOC100699000,LOC101480665 other downstream 1336628 31565245 ~ 31653583 (+)
LOC120544927 NA other downstream 1583112 31811729 ~ 31832260 (+)

Expression


Co-expression Network