RNA id: XM_039779692.1


Basic Information

Item Value
RNA id XM_039779692.1
length 3770
RNA type mRNA
GC content 0.51
exon number 22
gene id ogdhb
representative True

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 30190270 ~ 30228617 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGCACCGCTTAAGGACTACAGTTGCAAGGCTTCGGCCTTTAACGGCTGCACAGACAGCCCAGAGCCTATCACAGCCCAGGCTGTTGGCGATCGAAGGGGGATTAAGGACGTTTAAGCCCGTGATGCGCCTGAACACTTCTGTGGCGGCTGAGCCCTTTCTTAATGGCACCAGCTCCAACTATGTGGAGGAGATGTACTATGCGTGGCTGGAGAATCCCAAGAATGTGCACAAGTCCTGGGATATTTTTTTCCGTAACGCTAACGCTGGGGCTCCGCCCGGTGCGGCCTACCAGAGCCCTCCACCCCTCATTGGGTCTTCTCAGGGACTGGCCAGTGCCCGGGGACTGGTGGGGGCTAAACCGAATGTGGAGAAACTGGTGGAGGATCATCTAGCAGTTCAATCACTCATACGAGCATACCAGGTGCGAGGGCATCACATAGCCAAGTTGGACCCCATGAACATCAGCTGTGTAGACTTTGACGATGCGCCGTGTGCCATTGGTTTCCAGAACGTTGGTTTTTACGGGCTGGTTGAATCCGACTTGGACAAGGTGTTCCGGCTTCCCACGACCACCTTCATCGGTGGCAGCGAGGGCTCTTTGCCTCTCAGAGAGATTATACGACGTTTGGAGATGGCCTACTGTCAACATATTGGAGTAGAGTTTATGTTCATTAACGACATGGAGCAGTGCCAGTGGATCAGACAGAAGTTTGAGACCCCGGGAGTCATGCAGTTCAGTCTGGAAGAAAAGAAGACACTTCTGGCCCGAATGATCCGATCCACAAGGTTCGAGGAGTTCCTCCAGAGGAAGTGGTCTTCGGAGAAGCGGTTCGGTCTGGAAGGCTGCGAATCGCTCATCCCGGCCCTCAAGACGATCATCGACAAGTCCAGTCAGCGCGGAGTGGAGAGTGTGATCATGGGCATGCCTCACAGAGGGAGGCTGAATGTGCTGGCTAACGTGATCCGCAAGGAGCTGGACCAGATCTTCTGCCAGTTTGACTCTAAACTAGAGGCTGCTGATGAGGGTTCTGGTGACGTGAAATATCACTTGGGGATGTATCACAAGAGGATGAACCGGGTCAGCGACCGGGAAATCACGATGTCGCTCATGGCGAACCCGTCCCACCTGGAGGCAGTGGACCCGGTGGTGCAGGGAAAGACCAAAGCCGAGCAGTTCTACTGCGGAGACACCGAGGGCAAGAGGGCGATGTCCATTCTGATTCACGGCGACGCTGCGTTTGCAGGCCAGGGTATCGTGTACGAGACGTTCCACCTGTCTGACCTGCCGTCCTACACCACGCATGGCACCATACACGTGGTGGTCAACAACCAGATCGGTTTCACCACAGATCCCAGGATGGCGCGTTCATCTGCTTATCCTACAGATGTCGCACGGGTCGTCAACGCTCCCATCTTCCACGTCAACGCAGACGACCCCGAGgctgtggtgtatgtgtgtgaagtaGCAGCTGAATGGAGGAACACCTTCCATAAAGATGTAGTCGTAGACCTGGTTTGTTACAGACGCAACGGGCACAACGAGATGGACGAGCCGATGTTCACGCAGCCGCTGATGTACAAGCAGATCAAGAAGCAGAAAGGGGTCCTGCAGCAGTTTGCTGGAAAATTAATCGCAGAGGGAGTCATCACAACACAAGCCTATGAGGAGGAAGTTGCGAGGTACGACAAAATCTGCGAGGATGCTTACGCTCGCTCCAAAGATGAGAAGATCCTTCACATCAAACACTGGCTAGACTCCCCATGGCCTGATTTTTTCACAAAGGAGGGACAGCCCAAAAGTATGAACTGCCCTTCGACTGGCATCCGTGAAGAAGAACTCAACCATATTGGAAACATTGCTGCCTCCGTCCCAGAGGAAGACTTCACGATACACGGAGGTTTGAGTCGCATCCTAAAGGGCCGCGCAAATATGGTGAGTCAACGATTGTGCGACTGGGCTCTCGGGGAATACATGGCCTTCGGCTCTCTGCTCAAAGAAGGGATCCACGTACGCCTTAGTGGACAGGATGTGGAGAGGGGCACGTTCAGCCATCGCCACCATGTTCTTCACGACCAGAACGTTGATAAGAGGATCTGCATCCCAATGAACTACGTCTCGCCCGATCAAGCTCCTTACACTGTCTGCAACAGCTCTCTGTCGGAGTACGGAGTCCTGGGTTTTGAGTTAGGCTTTGCCATGGCCAGTCCCAACGCGCTGGTGCTGTGGGAGGCCCAGTTCGGAGACTTCCATAACACAGCTCAGTGCATCATCGACCAGTTCATCAGCTCGGGCCAGGCCAAGTGGGTGAGACAGAACGGCATTGTGCTGCTGCTTCCTCACGGCATGGAAGGAATGGGTCCAGAGCACTCGTCTGCCCGCCCTGAAAGGTTTCTACAGATGTGCAATGATGATCCTGATGTTTTCCCTAAACTGTCAGAGGACTTTGCAGTGCGTCAGCTGTACGACTGTAACTGGATCGTTGTCAACTGCTCTACTCCGGCAAACTACTTCCACGTCCTCCGCAGACAGATCCTGCAGCCCTTCAGGAAGCCtCTGATCGTGTTTACTCCCAAGTCGCTGCTGCGCCATCCTGAGGCCAAGTCCAGCTTTGATCACATGCTGCCAGGCACACACTTCATGCGTATAATCCCAGAGGACGGGCCTGCAGCGGCCAGCCCAGAGAAGGTGAAGAGAATCGTTTTCTGCACCGGCAAGATCTACTATGAACTCGCCCGTGAACGCAAGAACAGAGGCATGGACGACGCCGTAGCTGTCATCCGTGTCGAACAGctcTCGCCCTTCCCGTTTGATCTGGTGAAAGCAGAGACCGAGCGTTATCCAAACGCTGATCTGGTGTGGTGTCAGGAAGAGCACAAGAACCAGGGCTACTACGACTACGTCAAGCCCCGCATCCGCACCACCATCAACCGCAGCCGCCCCGTCTGgtaTGCTGGACGTGACccggcagcagctccagctaCCGGAAACAAGCCGACTCACCTCGCGGAGCTGCAGCGTTTACTGGACACGGCGTTCGATCTGGAAGCGTTTGCGGGACAAGTTTAACAActccactctctccctctcatctgTCGAGCCTCCTCTGACTTTACCTTTTTGAGGCAAAGTCACTTtgcattgatgtgtttttttttctcaatataTTTACACATCAGACCGGTTCTCAGGCGTcctctttaacccttgtgttgtcttcccgtcaaccttgaaaaaaacactttgttttccaacgtttttgacgcctttttttgtttttgctttttccaacgttttaaattgtaaaatttttctcagcgcttatttctacatcccatattttatgatagaaaacaaaaattggaaacgggtcaatttgacccgaagtcaacacaagggttaaacttaATGCACAATGACTTCAAACACTGTTACCATGAATACCTCGTGTTCACAGTGACACTTTTTATAGGCGAATGTTAAGTTAACCTGCATTGAATGTATGAATTTATACAAAAGTTAATTTGTAAGAAAACAAGTTTTAtcttcattttttcatttgctTTCATTTTGTTAATTACAAAATCATTTTGTGCCTGCTCTGCATGTTGCAGAATCGACCGAAATACTCGATGCAACCACCTGCTGAACAAATACTTGAATAGTTAACAGatctgaaatgtaaaaaaaaaaaaaaaaacaatcaaccaAATCTGTtaaccagcacctctaaagcgcCGATTAAAGCCCCTACAAGGCGTTTTTAACTG

Function

GO: NA

KEGG:

id description
K00164 OGDH, sucA; 2-oxoglutarate dehydrogenase E1 component

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU242166 lncRNA upstream 9075 30177988 ~ 30183476 (+) True G178896
TU242205 lncRNA downstream 6601 30235218 ~ 30275572 (+) True G178918
TU242227 lncRNA downstream 95495 30324112 ~ 30331614 (+) False LOC120545414
TU242230 lncRNA downstream 136143 30364760 ~ 30368909 (+) True G178933
TU242231 lncRNA downstream 146197 30374814 ~ 30375165 (+) True G178934
TU242247 lncRNA downstream 195336 30423953 ~ 30430650 (+) True G178950
XM_039779719.1 mRNA upstream 14854 30120358 ~ 30177697 (+) False LOC120545415
XM_039779695.1 mRNA downstream 30749 30259366 ~ 30310718 (+) False zmiz2
XM_039779696.1 mRNA downstream 32083 30260700 ~ 30310718 (+) False zmiz2
XM_039779694.1 mRNA downstream 35766 30264383 ~ 30310755 (+) False zmiz2
XM_039779697.1 mRNA downstream 35766 30264383 ~ 30310718 (+) False zmiz2
XM_039779733.1 mRNA downstream 87842 30316459 ~ 30322003 (+) True ppiab
TU242148 other upstream 170334 30021319 ~ 30022217 (+) True G178881
TU242149 other upstream 170334 30021319 ~ 30022217 (+) False G178881
TU242091 other upstream 397237 29794144 ~ 29795314 (+) False LOC120545429
TU242100 other upstream 448476 29742623 ~ 29744075 (+) True G178845
TU241682 other upstream 1100225 29084949 ~ 29092326 (+) True G178529
XR_005636691.1 other downstream 35766 30264383 ~ 30310894 (+) True zmiz2
TU242927 other downstream 1159130 31387747 ~ 31480094 (+) True G179407
TU243294 other downstream 1850560 32079177 ~ 32099542 (+) True G179655
TU243292 other downstream 1860811 32089428 ~ 32092131 (+) False G179655
TU243298 other downstream 1860811 32089428 ~ 32099542 (+) False G179655

Expression Profile