RNA id: XM_039779717.1


Basic Information

Item Value
RNA id XM_039779717.1
length 2209
RNA type mRNA
GC content 0.54
exon number 20
gene id LOC120545415
representative False

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 30120357 ~ 30177697 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tttgtgtgtgtgggtgggtgtgtgcgcgtgtgtgtgtttgtgtgccggGCTGCAGCTGAACCACTCAGCCGTCCGGAGGTTTAAAGGTGGGCGGAGACAGAGAAACCCGAGGAAGTCCTCCCGTCTGCAGCGACCGACGCACAGTGCATTTTCGGACTCGGCACCCGCACCCGTCCGAGGAGGGGAGACATCATGGCAACGACAACTTGTACGCGTTTTACAGATGAATACCAGCTGTACGAGGAGCTTGGCAAGGGGGCCTTTTCAGTGGTGCGCCGCTGTGTCAAACTCTGCACAGGCCAAGAGTACGCCGCCAAAATCATCAACACCAAAAAGCTTTCGGccagagACCATCAGAAACTGGAGAGAGAAGCCAGGATCTGCAGATTGCTCAAGCACTCCAACATCGTTCGTCTCCATGACAGTATCTCAGAGGAAGGCTTCCACTATCTCCTCTTTGACCTGGTGACAGGAGGGGAGCTGTTTGAAGACATTGTGGCTAGAGAGTACTACAGCGAAGCCGATGCCAGTCACTGTATCCATCAGATTCTAGACTGTGTGTCTTACACCCACCAACATGACATAGTGCACAGGGAcctcaagCCGGAGAACCTGCTGCTGGCCAGCAAGTGTAAGAACGCAGCGGTGAAGCTGGCTGACTTTGGACTCGCCATCGAGGTTCAAGGAGAGCAGCAGGCTTGGTTTGgctTTGCAGGGACTCCCGGCTACTTGTCCCCAGAGGTGCTGAGGAAGGAGGCGTACGGCAAACCTGTCGACATCTGGGCGTGCGGTGTGATCCTCTACATTCTTCTGGTTGGATACCCTCCGTTCTGGGACGAGGACCAGCACAAACTCTACCAGCAGATCAAAGCTGGAGCGTACGACTTTCCCTCCCCAGAGTGGGACACGGTGACTCCGGAGGCTAAAAATCTGATCAACCAGATGCTGACTATCAACCCAGCCAAGAGAATCACTGCCCAGGAGGCTCTGAAGCACCCATGGGTCTGCCAACGCTCAACAGTGGCCTCTATGATGCACAGACAGGAGACCGTCGAGTGCCTGAAGAAGTTTAACGCCAGGAGGAAACTCAAGggTGCCATTTTGACCACCATGCTCGTCTCCAGGAACTTCTCTGtGGGCCGGCAGACCACAGCGCCGGCGTCCGTCAGCGCTGTGGCTGGAACCACCGCTGGCATCGTGGAGCAAGCAGCCAAGAGTCTCCTCAACAAGAAGGCTGATGTCAAGGAGCCTCAGACTACAGTTATCCATAATCCAATAGATGGGACCAAGGGATCATCTGACAGCAGCAACACCACCATTGAGGATGAAGATGTGAAAGCTCGCAAACAGGAGATCATAAAGATCACCGAGCAGCTGATCGAAGCTGTCAACAATGGAGACTTTGAGGCGTATGCGAAGATCTGCGACCCTGGCCTGACCTCGTTTGAGCCGGAGGGCCTGGGTAATCTGGTGGAGGGAATGGACTTCCACAGATTTTACTTTGACAATCTCCTCTCCAAGAACAGCAAACCCATCCACACCACCATCCTCAACCCTCACGTGCACATGATCGGGGACGACGCCGCCTGCATCGCCTACATCCGCCTGACGCAGTTTGTCGATGTGCAGGGCCATCCTCGctccagccaatcagaagagACCAGAGTATGGCACCGCAGGGAGAGCCGGTGGCAAAACGTCCACTTCCACTGCTCAGGAGCTCCCGCTGCCCCGCTGCAGGGATGAgGTCTACGAGACTGAAGAGGAGGGCTAGAGGAGCGGAGGAGGAATGCGTGGATAAGATCTGAGAGAgcaacagaggacagagaggtgCAAGCAGATGCAAGGGGGGAGTCTGGAGAGTCTGTAATTTCTGGGATCGTGGTCGTCCTCctgctctcttctctctccgtctctctccaCATACAGCCGACAGCCGACGCTCCCATCATTAAACCTACACTACAGCAGTGGGCGTATCAGccgaaaaaagaaaagaaaagaaaaaaaaaaaaggaaactctTTAGCCTGCGTCTTGTCTTCAGTTGAGACCCGGACAACGCCTGTCCTTCATCCAGCGtggcactctctcactctcttatTCTTACTTATCTTCTAGTATTATTATGGCTGCCGTCTAATTGTTGTGCTCTGTCATCTGTAAAGTATATTTATTAGTCATTTTAAACCTTTTCCTTCTGGTATcta

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005516 calmodulin binding molecular_function
GO:0005524 ATP binding molecular_function
GO:0004683 calmodulin-dependent protein kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU242182 lncRNA upstream 11802 30106993 ~ 30108555 (+) True G178902
TU242150 lncRNA upstream 96878 30023031 ~ 30023479 (+) True G178882
TU242124 lncRNA upstream 124841 29925734 ~ 29995516 (+) True G178859
XR_005636694.1 lncRNA upstream 161968 29956270 ~ 29958389 (+) True LOC120545430
TU242111 lncRNA upstream 227173 29890345 ~ 29893184 (+) True G178851
TU242166 lncRNA downstream 291 30177988 ~ 30183476 (+) True G178896
TU242167 lncRNA downstream 291 30177988 ~ 30183476 (+) False G178896
TU242171 lncRNA downstream 291 30177988 ~ 30183476 (+) False G178896
TU242172 lncRNA downstream 291 30177988 ~ 30183476 (+) False G178896
TU242173 lncRNA downstream 291 30177988 ~ 30183476 (+) False G178896
XM_039779726.1 mRNA upstream 4811 30108774 ~ 30115546 (+) True nudcd3
XM_039779706.1 mRNA upstream 32337 30061600 ~ 30088020 (+) True gnsb
XM_039779729.1 mRNA upstream 155109 29951452 ~ 29965248 (+) True il1b
XM_039779699.1 mRNA upstream 195092 29895677 ~ 29925265 (+) True LOC120545406
XM_039779060.1 mRNA upstream 237436 29846353 ~ 29882921 (+) True LOC120545067
XM_039779693.1 mRNA downstream 12573 30190270 ~ 30227916 (+) False ogdhb
XM_039779692.1 mRNA downstream 14854 30192551 ~ 30228617 (+) True ogdhb
XM_039779695.1 mRNA downstream 81669 30259366 ~ 30310718 (+) False zmiz2
XM_039779696.1 mRNA downstream 83003 30260700 ~ 30310718 (+) False zmiz2
XM_039779694.1 mRNA downstream 86686 30264383 ~ 30310755 (+) False zmiz2
TU242148 other upstream 98140 30021319 ~ 30022217 (+) True G178881
TU242149 other upstream 98140 30021319 ~ 30022217 (+) False G178881
TU242091 other upstream 325043 29794144 ~ 29795314 (+) False LOC120545429
TU242100 other upstream 376282 29742623 ~ 29744075 (+) True G178845
TU241682 other upstream 1028031 29084949 ~ 29092326 (+) True G178529
XR_005636691.1 other downstream 86686 30264383 ~ 30310894 (+) True zmiz2
TU242927 other downstream 1210050 31387747 ~ 31480094 (+) True G179407
TU243294 other downstream 1901480 32079177 ~ 32099542 (+) True G179655
TU243292 other downstream 1911731 32089428 ~ 32092131 (+) False G179655
TU243298 other downstream 1911731 32089428 ~ 32099542 (+) False G179655

Expression Profile