RNA id: TU242182


Basic Information

Item Value
RNA id TU242182
length 315
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G178902
representative True

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 30106993 ~ 30108555 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGGACCTGGCTAAAGCACCAACAGCCTCGCGCTCCCTGTGCTGGTCAAGGACGCCGCCATGTTTTTTGAATATTAAACGTAAGAGGCGTAGAGCGCTAAGACTATTTTctcaaatgtgttatttttccGATGTAGTTTTAACATGTAATTAAAACTGAAACACGCAACTGATTATAACTCGTgctaatattagtcaaaattaGTTTGTCTCCGGTAAGCAATGCATGTACACTGGAACTGTTTATCCAACAGTCGGGCATCTGTTTCCGCCGAACGACTGTTGACATGTACCAACCGGATAAAGACAAAGTAAAA

Function

GO: NA

KEGG:

id description
ko03020 RNA polymerase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU242118 lncRNA upstream 271 29842666 ~ 30106722 (+) False G178854
TU242150 lncRNA upstream 83514 30023031 ~ 30023479 (+) True G178882
TU242124 lncRNA upstream 111477 29925734 ~ 29995516 (+) True G178859
XR_005636694.1 lncRNA upstream 148604 29956270 ~ 29958389 (+) True LOC120545430
TU242111 lncRNA upstream 213809 29890345 ~ 29893184 (+) True G178851
TU242189 lncRNA downstream 16083 30124638 ~ 30125211 (+) True G178907
TU242193 lncRNA downstream 47810 30156365 ~ 30156778 (+) True G178910
TU242196 lncRNA downstream 47810 30156365 ~ 30156778 (+) False G178910
TU242166 lncRNA downstream 69433 30177988 ~ 30183476 (+) True G178896
TU242167 lncRNA downstream 69433 30177988 ~ 30183476 (+) False G178896
XM_039779706.1 mRNA upstream 18973 30061600 ~ 30088020 (+) True gnsb
XM_039779729.1 mRNA upstream 141745 29951452 ~ 29965248 (+) True il1b
XM_039779699.1 mRNA upstream 181728 29895677 ~ 29925265 (+) True LOC120545406
XM_039779060.1 mRNA upstream 224072 29846353 ~ 29882921 (+) True LOC120545067
XM_039779722.1 mRNA upstream 265288 29831363 ~ 29841705 (+) True sec14l7
XM_039779726.1 mRNA downstream 219 30108774 ~ 30115546 (+) True nudcd3
XM_039779712.1 mRNA downstream 11802 30120357 ~ 30177697 (+) True LOC120545415
XM_039779717.1 mRNA downstream 11802 30120357 ~ 30177697 (+) False LOC120545415
XM_039779711.1 mRNA downstream 11802 30120357 ~ 30177697 (+) False LOC120545415
XM_039779714.1 mRNA downstream 11803 30120358 ~ 30177697 (+) False LOC120545415
TU242148 other upstream 84776 30021319 ~ 30022217 (+) True G178881
TU242149 other upstream 84776 30021319 ~ 30022217 (+) False G178881
TU242091 other upstream 311679 29794144 ~ 29795314 (+) False LOC120545429
TU242100 other upstream 362918 29742623 ~ 29744075 (+) True G178845
TU241682 other upstream 1014667 29084949 ~ 29092326 (+) True G178529
XR_005636691.1 other downstream 155828 30264383 ~ 30310894 (+) True zmiz2
TU242927 other downstream 1279192 31387747 ~ 31480094 (+) True G179407
TU243294 other downstream 1970622 32079177 ~ 32099542 (+) True G179655
TU243292 other downstream 1980873 32089428 ~ 32092131 (+) False G179655
TU243298 other downstream 1980873 32089428 ~ 32099542 (+) False G179655

Expression Profile