RNA id: TU242193


Basic Information

Item Value
RNA id TU242193
length 369
lncRNA type intronic
GC content 0.43
exon number 2
gene id G178910
representative True

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 30156365 ~ 30156778 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaggtttgtggccctatctttgtggggacccgtcattgacataattcattccctagccccttaccctaaccttaaccatcacaactaaatgcctaaccttaacccttaccctcaccttaaccatcacaactaaatgtctaaccttaacccttaccctaaccttaaccatcacaactaaatgcctaaccttaacccttaccctaaccttaaccatcacaactaaatgtctaaccttaacccttaccctaaccttaaccatcacaactaaatgtctaaccttaacccttaccctaaccttaaccatcacac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU242189 lncRNA upstream 31154 30124638 ~ 30125211 (+) True G178907
TU242182 lncRNA upstream 47810 30106993 ~ 30108555 (+) True G178902
TU242150 lncRNA upstream 132886 30023031 ~ 30023479 (+) True G178882
TU242124 lncRNA upstream 160849 29925734 ~ 29995516 (+) True G178859
XR_005636694.1 lncRNA upstream 197976 29956270 ~ 29958389 (+) True LOC120545430
TU242166 lncRNA downstream 21210 30177988 ~ 30183476 (+) True G178896
TU242167 lncRNA downstream 21210 30177988 ~ 30183476 (+) False G178896
TU242171 lncRNA downstream 21210 30177988 ~ 30183476 (+) False G178896
TU242172 lncRNA downstream 21210 30177988 ~ 30183476 (+) False G178896
TU242173 lncRNA downstream 21210 30177988 ~ 30183476 (+) False G178896
XM_039779726.1 mRNA upstream 40819 30108774 ~ 30115546 (+) True nudcd3
XM_039779706.1 mRNA upstream 68345 30061600 ~ 30088020 (+) True gnsb
XM_039779729.1 mRNA upstream 191117 29951452 ~ 29965248 (+) True il1b
XM_039779699.1 mRNA upstream 231100 29895677 ~ 29925265 (+) True LOC120545406
XM_039779060.1 mRNA upstream 273444 29846353 ~ 29882921 (+) True LOC120545067
XM_039779693.1 mRNA downstream 33492 30190270 ~ 30227916 (+) False ogdhb
XM_039779692.1 mRNA downstream 35773 30192551 ~ 30228617 (+) True ogdhb
XM_039779695.1 mRNA downstream 102588 30259366 ~ 30310718 (+) False zmiz2
XM_039779696.1 mRNA downstream 103922 30260700 ~ 30310718 (+) False zmiz2
XM_039779694.1 mRNA downstream 107605 30264383 ~ 30310755 (+) False zmiz2
TU242148 other upstream 134148 30021319 ~ 30022217 (+) True G178881
TU242149 other upstream 134148 30021319 ~ 30022217 (+) False G178881
TU242091 other upstream 361051 29794144 ~ 29795314 (+) False LOC120545429
TU242100 other upstream 412290 29742623 ~ 29744075 (+) True G178845
TU241682 other upstream 1064039 29084949 ~ 29092326 (+) True G178529
XR_005636691.1 other downstream 107605 30264383 ~ 30310894 (+) True zmiz2
TU242927 other downstream 1230969 31387747 ~ 31480094 (+) True G179407
TU243294 other downstream 1922399 32079177 ~ 32099542 (+) True G179655
TU243292 other downstream 1932650 32089428 ~ 32092131 (+) False G179655
TU243298 other downstream 1932650 32089428 ~ 32099542 (+) False G179655

Expression Profile