RNA id: TU242107


Basic Information

Item Value
RNA id TU242107
length 260
lncRNA type intronic
GC content 0.45
exon number 2
gene id G178848
representative True

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 29772651 ~ 29773165 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCTTGCCACaccctgctgccaccccagttggcagcagCGAATTAAAAGTTACggccaatttgacaatttacgagCGTGAATGTCCAAtgtttgcttcccctctcacacatctgccactcatcacctgtgtcttaccttaatgcctttcctgtgataaAGCCCCTTACTTCtgtcatacttctatctcctgttaagtgagatcacattgcacggtcacttattcctaatatgaacgGTTTCACATGAAACCTCAAATGCAG

Function

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU242097 lncRNA upstream 22356 29742623 ~ 29750295 (+) False G178845
TU242104 lncRNA upstream 22356 29742623 ~ 29750295 (+) False G178845
TU242102 lncRNA upstream 29321 29742623 ~ 29743330 (+) False G178845
TU242103 lncRNA upstream 29321 29742623 ~ 29743330 (+) False G178845
TU242082 lncRNA upstream 70812 29692438 ~ 29701839 (+) True G178835
TU242123 lncRNA downstream 29132 29802297 ~ 29803683 (+) True G178858
TU242116 lncRNA downstream 66671 29839836 ~ 29844941 (+) True G178854
TU242118 lncRNA downstream 69501 29842666 ~ 30106722 (+) False G178854
TU242111 lncRNA downstream 117180 29890345 ~ 29893184 (+) True G178851
TU242124 lncRNA downstream 152569 29925734 ~ 29995516 (+) True G178859
XM_039779724.1 mRNA upstream 82343 29669572 ~ 29690308 (+) True ckmt2a
XM_039779725.1 mRNA upstream 82343 29669572 ~ 29690308 (+) False ckmt2a
XM_039779058.1 mRNA upstream 105420 29601531 ~ 29667231 (+) True rasgrf2a
XM_039778902.1 mRNA upstream 185011 29584043 ~ 29587640 (+) True LOC120544985
XM_039780776.1 mRNA upstream 204402 29553358 ~ 29568249 (+) True oclna
XM_039779735.1 mRNA downstream 20639 29793804 ~ 29795825 (+) True LOC120545429
XM_039779722.1 mRNA downstream 58198 29831363 ~ 29841705 (+) True sec14l7
XM_039779060.1 mRNA downstream 73188 29846353 ~ 29882921 (+) True LOC120545067
XM_039779699.1 mRNA downstream 122512 29895677 ~ 29925265 (+) True LOC120545406
XM_039779729.1 mRNA downstream 178287 29951452 ~ 29965248 (+) True il1b
TU242100 other upstream 28576 29742623 ~ 29744075 (+) True G178845
TU241682 other upstream 680325 29084949 ~ 29092326 (+) True G178529
TU241633 other upstream 827207 28944507 ~ 28945444 (+) True G178506
XR_005636601.1 other upstream 1184625 28580268 ~ 28588026 (+) False LOC120544907
XR_005636773.1 other upstream 2074719 27656536 ~ 27697932 (+) False lhfpl2a
TU242091 other downstream 20979 29794144 ~ 29795314 (+) False LOC120545429
TU242148 other downstream 248154 30021319 ~ 30022217 (+) True G178881
TU242149 other downstream 248154 30021319 ~ 30022217 (+) False G178881
XR_005636691.1 other downstream 491218 30264383 ~ 30310894 (+) True zmiz2
TU242927 other downstream 1614582 31387747 ~ 31480094 (+) True G179407

Expression Profile