RNA id: XR_005636773.1


Basic Information

Item Value
RNA id XR_005636773.1
length 2222
RNA type transcript
GC content 0.52
exon number 5
gene id lhfpl2a
representative False

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 27656536 ~ 27697932 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACGGGGGCAGTCACTCCCATCCCAACGGTAGTATGTCTGGGGGCAGAAGAGGAGGACGGAACCATTCATTCTTCTGTGGTTCCCGGAGAAAACgtggaggatgaagaagagacactaaagggggaaaaaataataacagttCAAATCAAACCCGAAGACTTAAACTGCACGAGGAAGACACCCATAAAGACCCTGCTGGACTTTAGAGGCGCCGCTTCAAAAAAATCGCACCGCCAGCAGTTAGGCGTTGTGAGGAGTTGAAAGATTTGGATCGTTTGGATTTAACTGAAGAATTTGTCTCTGCGTCCACACGAGAGGTGTGTCTGATGTGACGCCAGCGGGCTGGCTCAGGGAACACAACTTCAATACAATGTAGACACCGAAAACCAGACAGAATAAGAGCCTGAAGACCGAGTCGACCAAAGGAGGGTGAGTtcaaggaggaggaagaacagCTGTGCTGAAACGACACCGGAAGAAGATAAGAAGTGAAAGgagcagagagaaaaaggggGAAGCAGCAGACTGTGAATCATTGACCAGAACCTTGTCTGTACAGCGCTGTCGTCCACTCCTTCCCGAGAAGTGTTCACTTGCTCTCATATCTCCGCCGGAGAAGAATCCCAACCACCGGCTCTCGGCCTTTCGAGGGCCTCACGCTCTACCTGTCCACCTCTCAGCAGCGTTGAAATCTGAGCAGAGAGAGACTCCAGCCACCGTCAGAATGTGCCATGTCATTGTCACCTGCCGCTCCATGCTGTGGACTCTGCTGAGTATTGTGACCGCTTTCGGAGAGCTCATCGCCTTCATGAGCACTGACTGGCTGGTGGGATTCCCCCGCACACCTGATGCTGTCTTCGGCCCCCATGGGGCCACCGCAGCCGGAGAGGCCTACAGGCCCACTTTAGGCATCTACGGCCGCTGTATAAAACTGCCCCACCTTAAGCGTGGAATACTGTGCGGACCGTACGCGATACACTTTGGGGAGATTGCCAGCGGGTTCTGGCAGGCAACTTCTATCTTCCTGGCGGCAGGGATCCTGCTGCTGTGTGCTGTGGCGTTCATCTCGGTCTTCACCATGTGCTTccagagcatcatgaagaagaGCATCTTCAACGTGTGTGGACTGCTGCAAGGGATCGCAGGTCTGTTCCTGATCCTGGGTCTGATGCTGTACCCCGCTGGCTGGGGTTCAGACAAGGTCCAGCTGTACTGCGGTCCCGACGCGGCTCCGTACCGGGCCGGGCTCTGCTCCATGGGCTGGGCCTTCTACACCGCCATGGGCGGCACCGTGCTCACCTTCATCTGCGCTGTCTTCTCCGCACAGGCCGAGATCGCCACCTCCAGCGACAAGGTCCAGGAGGAGATCGAGGAAGGGAAAAGCCTCATCTGCCTCCTCTGAGGCCCAGATACTTTTGTCCTGttgggaaaagaagaagaagaagaagacctgCCTTCTGTCTTTTCTCATAAGACTGGCCTGTGAAATGGAGGCCCCTGCGTTGTTTACCACTAAAactgactgtttgtctgtcGCTGTTTTGTGTTCATGTGGGAGAAATCTACAAGTGCCAAGTTTTTTTCTCagtgtttgtctttgtctttcagCAACGAGAGGTGCTGTGTCTGTTATTGTATTCACCTTTCACAATGTGGACGCCCAGAGAGGCTTTGTCTGTCGCCACCTGTTCTGTAAATAAGtgtgattatatatattttgtacatAGTTATGATGATCGCAGAATGATCGGTCGGCTTGATCCAGGCTGGGCTGATGATGTCACTCTTGCCTTAAAAACACTGGTGTTTTTGTCACCAGACTACAACCAGCTAAACCTGGATCTGTTAACTGTTTGCCACGTACCCTTGAAATGTATCGATGGAAAATGGATCTCAACCCAGACTGCGCGAGGACGTGCAGAGGAAAGCTCTGTGGTGCCTTCTCGTTTGTCCCCTCTCCCGAAATGAAGTCAGCTTAATCCTAGCCTGAGCGGAGAGCTGACCTGTGAAGGGTCTGTGCCTGGTCCTCGTTCAGCAGACATCCTGGAATCTGTGCACAAAGACATGGACAATGAATGCTGAGGACACATGCAGTACATGaagtattgttattgttattagtaATGTCTGGTTTCAGGGAGTCTGCCGAGTCCTAGATGGTGTCCTATCTGTTCCCATGTGTCTGTTCTACCGAAAGAATAAAgagaagggagaaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU241244 lncRNA upstream 48323 27607480 ~ 27608213 (+) True G178205
TU241237 lncRNA upstream 82858 27570553 ~ 27573678 (+) True G178198
TU241193 lncRNA upstream 132388 27517476 ~ 27524148 (+) False G178166
TU241195 lncRNA upstream 134580 27516823 ~ 27521956 (+) True G178166
TU241182 lncRNA upstream 142628 27471911 ~ 27513908 (+) True G178155
TU241251 lncRNA downstream 4927 27702859 ~ 27706063 (+) True G178210
TU241305 lncRNA downstream 115551 27813483 ~ 27813878 (+) True G178256
TU241315 lncRNA downstream 234886 27932818 ~ 27933019 (+) True G178266
TU241316 lncRNA downstream 240972 27938904 ~ 27939748 (+) True G178267
TU241421 lncRNA downstream 513227 28211159 ~ 28211592 (+) True G178348
XM_039780630.1 mRNA upstream 4447 27633737 ~ 27652089 (+) True arsb
XM_039779633.1 mRNA upstream 25455 27610802 ~ 27631081 (+) True dmgdh
XM_039779681.1 mRNA upstream 88427 27539440 ~ 27568109 (+) True LOC120545398
XM_039779682.1 mRNA upstream 88427 27539440 ~ 27568109 (+) False LOC120545398
XM_039779683.1 mRNA upstream 88427 27539441 ~ 27568109 (+) False LOC120545398
XM_039779591.1 mRNA downstream 22265 27720197 ~ 27784006 (+) False ap3b1a
XM_039779590.1 mRNA downstream 28005 27725937 ~ 27784006 (+) True ap3b1a
XM_039780363.1 mRNA downstream 131447 27829379 ~ 27844258 (+) True tbca
XM_039778922.1 mRNA downstream 151733 27849665 ~ 27854808 (+) True otpa
XM_039778923.1 mRNA downstream 151733 27849665 ~ 27854808 (+) False otpa
TU241015 other upstream 645141 27010197 ~ 27011395 (+) False nln
XR_005636776.1 other upstream 1041577 26586647 ~ 26614959 (+) True LOC120546038
XR_005636774.1 other upstream 1041577 26586647 ~ 26614959 (+) False LOC120546038
XR_005636775.1 other upstream 1041577 26586647 ~ 26614959 (+) False LOC120546038
XR_005636777.1 other upstream 1041577 26589511 ~ 26614959 (+) False LOC120546038
XR_005636601.1 other downstream 882336 28580268 ~ 28588026 (+) False LOC120544907
TU241633 other downstream 1246575 28944507 ~ 28945444 (+) True G178506
TU241682 other downstream 1387017 29084949 ~ 29092326 (+) True G178529
TU242100 other downstream 2044691 29742623 ~ 29744075 (+) True G178845
TU242091 other downstream 2096212 29794144 ~ 29795314 (+) False LOC120545429

Expression Profile