RNA id: XR_005636774.1


Basic Information

Item Value
RNA id XR_005636774.1
length 2019
RNA type transcript
GC content 0.48
exon number 14
gene id LOC120546038
representative False

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 26586647 ~ 26614959 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCACTCGCTCAGTCAGCTGTGAGATTAGTGGCTCCACTCACTGTACTGCCTGCTGACTGCACAGAGACTGGAGCAGACCTCAGAGGCACTGCAGAGAAACAACATGAGCAATAACACCCAGGAGGAAGAGGTGCTGAAGCAGATTGAGATGGAGGTGCGAATGCGGGAGGGAGCCAGTAAGCTACTGGCAGCTTGTTCCAGGAGAGAGCAGGCCCTGGAGGCCTCCAGGAGCCTGCTAACCTGCAATGCCCGCATTCTGGCCTTGCTCAGCCAACTACAAAGGATGAGGAAAGCTCAAATACTACAAAAAGTGGGACGCAGGCCATCTGAAGATGTTGTGCCATGTGTAGGAAAAGTATCCCTTTCAGACTTGCGAATCCCACTGATGTGGAAAGACTCCGAGTACTTCAAAAACAAAGGAGAGCTACAGCGCTGCGCTGTTTTCTGCTTGCTTCACTGTGGTACAGAGATCTATGACACTGATCTGGTGATGGTAGACAGGACTTTAACTGACATCTGTTTTGAAGACACTATCATATTCAGCAGCGAGGTAGGCCCAGGGTTTCAGCTTCGCGTTGAACTGTACAGCAGTTGTACGGTCGAGGATTTCTCCCCGGGGGCTCTAGGACCCAGGAGAGCGAACCGTCTGGGGGGCTCAGTGGGATGCTCCTCGGGGAAAAAGATCCGTGCTGCGTTTGAGTCTGCAGCTGTTTGTGGATCCAGTGGAGGAAATGTAGAACCTGGAAGAGTGTCCCCGCCTTTATCCCCTGACCTGTCTACACTGGGGCCTAAGTATAACCTGCTGGCTCACACAACACTGAGAATAGAACACGTCCAGGAAGGTTTCAAGACGCATGATTTGTCACTGGCAGCAACAGAGAATAATCCATTCTGGTTGCCCCTATACGGCAACATGTGCTGCCGTCTAGTTGCTCAGCCGCTGTGCATGATTCAGCCAACGATAAGTGGCCAACTCAAGGTTAAGCTTGGAGAGGACCTTAATTGCTGGGAAAATGTCTATGGAGTCCTCAGGGAGCAAAGTCTTCTCTGCTATCAGAGTCAAGAAGACCTGGAGTCTGAGGACAAGCTATTACTTGTAATCCCCATCAAAAAGCATACCCTtgtctgtgtgtcagagagGGATCCTGTCGATCACCAGAGTATATATATCAGCACACAGCATCAAGGAGAGGAACTAACCTTCACGCTAACCACGCACACACCTGAAGACACGCAGCGCTGGACCCAGGCCATCTGGCAGCACGTCTACAACATGGGCCAGTGGAAGCAGTGTTGTGATCACCTCATGAAGATTGAAATGCCGAGCTCCAGGAAAGCCATTCCAGTGAAGCAGGGATCGCTATACCATGAAATAGTAACGCCCTCCTCTCCTGGAGAGGGGCTTGTGGTTCCGGATTTATCTGCGGAGATCCGCACTTTGCTCTCTTCCTACTACAAGGAAAGGGTTCCAGAAAATTGTCTTTGACAAGGCTCCAGTTTCAAAGAGACATTCATACGGACATATAAAAACAAGACATGGAGTGTTGAGTTATTGATGACGCTGCCACAGTCGCACTGGAGGAGTGAGAAACTGTTCTTATTTTATTCGTTTGTGGTTACCACGCCTGGTCAAGGAAACGGACATGGACATGATAAATGGTGCTATTTCAAAATTTTACCCAACCAGCAGTAttggtaacaaaaaaaaaagggagtgaAAGATGACAAGTGTGAGTCGGAAATATCTACCCCAAGCTgactgtacattttaaatgcGGAAAAAACTCCCTGTACCATTGTCTCGcaatattgtacattttgtgcatgtaaaGAGAGACCAGTACACGTACCAAGTTATTCTGTTCATCAGTTCCAGTACAGTATATTGATGTGATAATTCACTGAATTTGCCCAGTGTTTGGAAGACGTCTGCAGTGACGAATGGAAGACTATTCTGCCACTAATGTGTTGCTCATTTGAATTTCAAGTGTTATAATAAAGCCATACAAAAGAAATCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU240870 lncRNA upstream 71685 26514526 ~ 26514962 (+) True G177937
TU240788 lncRNA upstream 174634 26336307 ~ 26412013 (+) False LOC120545651
TU240792 lncRNA upstream 212959 26369841 ~ 26373688 (+) True G177876
TU240790 lncRNA upstream 225375 26360394 ~ 26361272 (+) True G177874
TU240758 lncRNA upstream 341756 26219481 ~ 26244891 (+) False G177848
XR_005636783.1 lncRNA downstream 76422 26691381 ~ 26692888 (+) True LOC120546076
TU240899 lncRNA downstream 112879 26727838 ~ 26746260 (+) False LOC120545040
TU241014 lncRNA downstream 450318 27065277 ~ 27065705 (+) False erbin
TU241021 lncRNA downstream 489819 27104778 ~ 27105030 (+) True G178045
TU241182 lncRNA downstream 856952 27471911 ~ 27513908 (+) True G178155
XM_039779808.1 mRNA upstream 434 26566849 ~ 26586213 (+) False zgc:162472
XM_039778981.1 mRNA downstream 112851 26727810 ~ 26930294 (+) True LOC120545040
XM_039778982.1 mRNA downstream 325195 26940154 ~ 26966123 (+) True LOC120545041
XM_039780471.1 mRNA downstream 358796 26973755 ~ 26975385 (+) True LOC120545850
XM_039780512.1 mRNA downstream 362502 26977461 ~ 26979183 (+) True LOC120545882
XM_039780711.1 mRNA downstream 366197 26981156 ~ 26992779 (+) True trappc13
TU240757 other upstream 363049 26223115 ~ 26223598 (+) True G177848
TU240698 other upstream 564816 26018164 ~ 26021831 (+) True G177809
TU240625 other upstream 744204 25833558 ~ 25842443 (+) False G177759
TU240567 other upstream 1052958 25533132 ~ 25533689 (+) True G177715
TU240496 other upstream 1281615 25245583 ~ 25305032 (+) False zgc:63972
TU241015 other downstream 395238 27010197 ~ 27011395 (+) False nln
XR_005636773.1 other downstream 1041577 27656536 ~ 27697932 (+) False lhfpl2a
XR_005636601.1 other downstream 1965309 28580268 ~ 28588026 (+) False LOC120544907
TU241633 other downstream 2329548 28944507 ~ 28945444 (+) True G178506
TU241682 other downstream 2469990 29084949 ~ 29092326 (+) True G178529