RNA id: XR_005636601.1


Basic Information

Item Value
RNA id XR_005636601.1
length 1553
RNA type transcript
GC content 0.46
exon number 9
gene id LOC120544907
representative False

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 28580268 ~ 28588032 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGTTTGTTAACCGCCAATAAaactcaaagaagaagaagaaaaaaacgacGCTCACAAACCCCCCTAAATTGTAGCAACTGAAACTAAATTTTGTCTctatgaaacacatttttaccTGAAACCAGACTAACTTTGCAGTTATATTAACTTAGACAAACGAAATAACTTGCTCTAATTAACGACAACGAGTTACAGCTAACGATACATGATAACAACAATATTAGCTAGCcgctagctagcattagctgtcAGCAAGCCAACTAGCTAACGTCAGCTTTTAGCTTTTGCAAATAATTCTGACGTTGCTCGAGTTCAGCGACAACGTTTAAAAGCCAAAAACAATGTCGGACGACTATGAGTTCAGCGACGACACGACCATGATGAGGATGGAAGAGGACGGGGAGGCAAACAGCGATGAGCCGATGTCTGCAGCCGGGGACTGTGGCCCGGTGGGGGGCGAGGCCGAGGGATCAAGAATTGACGCCAGTAAAaacgaggaggatgagggTAAGATGTTTGTAGGAGGGCTCAGCTGGGACACGACTAAGAAGGACCTGAAAGATTATTTTTCCAAGTACGGGGAGGTTGTAGACTGCACTTTAAAACTGGACCCCATGACTGGCCGTTCACGGGGCTTTGGCTTTGTGCTCTTCAAAGAACCAGACAGTGTTGACAAGGTTGCCACACAGAAGGAACATAAACTCAATGGAAAGGTCATTGACCCCAAAAAAGCCAAAGCCATGAAGAGCAAGGAGCCCGTCAAGAAGATCTTTGTTGGTGGTCTCTCTCCAGACACTCCTGAAGACAAAGTCAGAGAGTACTTTAGTGCCTTCGGAGAGCTGGAGTCAATTGAACTTCCCATggaaaacaaaaccaacaaaagGAGAGGCTTCTGCTTCATCACATTCAAAGAGGAGGAACCAGTTAAGGGCATCATGGAGAAAAAGTACCACAATATTGGACTAAGCAAGTGTGAAATAAAAGTGGCAATGTCCAAGGAACAgtatcagcagcagcagtactGGGGAGGCAGAGGTGGCTACCCATCCAGGTCTCGAGGAAGAGGCGGTGGTCCCAATCAGAATTGGAACCAGGGTTATGGCAACTACTGGAATCAAGGCTATGGGAATTATGGCAATTATGGTTACAATAATCAAGGATATGGAGGATACGGTGGCTATGATTACCCTGGTTACAACAACTATTATGGATATGGTGACTACAACGATGAATCTGGTGGATATGGCAAGTCGCCGCGGCGTGGTGGTCACACCAACAGTTACAAGCCATATTAACGGAGGAAACTCATCTTCAAGTAGCGGAGCTTCCTTGCAGGCCATGAGCTGACTCCCAGATACTCTCAGGGCCCGCTCAATGCGGACCGGGTACGAGAAGCATACGCTCTCGAATGCTGCCATTTGGTTTCAGAGTGATGAAAGACAGCAGAGCGCTGGTGGAGCGTTGGCCAGAGAGATGATGGTATCCAGCAAAGATCACTAGCTGATTGTAAGAAACTCATGAAGAGCACTATGACCTACACTACATTTCctcta

Function

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU241524 lncRNA upstream 10785 28567208 ~ 28569483 (+) False LOC120545218
TU241531 lncRNA upstream 26167 28552827 ~ 28554101 (+) True G178426
TU241530 lncRNA upstream 27178 28552827 ~ 28553090 (+) False G178426
XR_005636721.1 lncRNA upstream 55428 28522284 ~ 28524840 (+) True LOC120545668
TU241519 lncRNA upstream 55436 28522293 ~ 28524832 (+) False LOC120545668
TU241542 lncRNA downstream 6566 28594592 ~ 28594932 (+) True G178435
TU241554 lncRNA downstream 52262 28640288 ~ 28640868 (+) True G178439
TU241556 lncRNA downstream 70459 28658485 ~ 28701406 (+) True G178441
TU241578 lncRNA downstream 240083 28828109 ~ 28832330 (+) False G178460
TU241577 lncRNA downstream 243253 28831279 ~ 28832330 (+) True G178460
XM_039779358.1 mRNA upstream 7873 28567146 ~ 28572395 (+) True LOC120545218
XM_039779357.1 mRNA upstream 16151 28556910 ~ 28564117 (+) True LOC120545217
XM_039779356.1 mRNA upstream 28319 28526507 ~ 28551949 (+) False sec31a
XM_039779355.1 mRNA upstream 28319 28526507 ~ 28551949 (+) False sec31a
XM_039779354.1 mRNA upstream 28319 28526508 ~ 28551949 (+) True sec31a
XM_039778780.1 mRNA downstream 7374 28595400 ~ 28607882 (+) True mat2al
XM_039778783.1 mRNA downstream 20783 28608809 ~ 28631829 (+) True LOC120544911
XM_039778782.1 mRNA downstream 25005 28613031 ~ 28631829 (+) False LOC120544911
XM_039778781.1 mRNA downstream 25008 28613034 ~ 28631829 (+) False LOC120544911
XM_039778785.1 mRNA downstream 35575 28623601 ~ 28631829 (+) False LOC120544911
XR_005636773.1 other upstream 882336 27656536 ~ 27697932 (+) False lhfpl2a
TU241015 other upstream 1568873 27010197 ~ 27011395 (+) False nln
XR_005636776.1 other upstream 1965309 26586647 ~ 26614959 (+) True LOC120546038
TU241633 other downstream 356481 28944507 ~ 28945444 (+) True G178506
TU241682 other downstream 496923 29084949 ~ 29092326 (+) True G178529
TU242100 other downstream 1154597 29742623 ~ 29744075 (+) True G178845
TU242091 other downstream 1206118 29794144 ~ 29795314 (+) False LOC120545429
TU242148 other downstream 1433293 30021319 ~ 30022217 (+) True G178881

Expression Profile