LOC120545218


Basic Information

Item Value
gene id LOC120545218
gene name NA
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 28567146 ~ 28572395 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU241524
TGTAGTCATACCTGCTTTATGACGCCACGACGACATCACTACAACTCTTATCAGCAAAGAAAGAACTGTTGCGACGTGTATTACCGACTATATTTACAAGATAATGTAGAGGAGACGTTTATGTGACGTTGCCGTATTTCCAGTCTACAAACATTTAGCTGAACCACGGAGCGGTGAGAGAATCGCCTCAGGGCGGACAGGTGAGGCAGTTTCGTCAGActggcagacaggcagactgtGTGTGCTGTCAGAGGAGACGCGATGTGGAGCAGCAGTCGGTGGGCTCTTCTACCTCCCGTCTACTCTGTGCTCACTGCTGCCGGACTGTGGCTGGTATACTTTGTAGCTGTAAATGATGAGAAGATCGCACCCCTGGGTTCATCATACAGgagaagaaatgGATCGTTTTATCCTCCCTTCATTAGTATTGCAGGCAACTTTTCACCAGCCAGCTGCATC
>XM_039779358.1
ttccacgcttttattttgaaggacaGATACCCTAACCGGAAGATCTGTCTTGCCAGGATAAATGTAGTCATACCTGCTTTATGACGCCACGACGACATCACTACAACTCTTATCAGCAAAGAAAGAACTGTTGCGACGTGTATTACCGACTATATTTACAAGATAATGTAGAGGAGACGTTTATGTGACGTTGCCGTATTTCCAGTCTACAAACATTTAGCTGAACCACGGAGCGGTGAGAGAATCGCCTCAGGGCGGACAGGTGAGGCAGTTTCGTCAGActggcagacaggcagactgtGTGTGCTGTCAGAGGAGACGCGATGTGGAGCAGCAGTCGGTGGGCTCTTCTACCTCCCGTCTACTCTGTGCTCACTGCTGCCGGACTGTGGCTGGTATACTTTGTAGCTGTAAATGATGAGAAGATCGCACCCCTGGGTTCATCATACAGgagaagaaatgGATCGTTTTATCCTCCCTTCATTAGTATTGCAGGCAACTTTTCACCAGCCAGCTGCATCTTCAGCGGTCAGCTGAACGTGTTTGTCTTTTCAGGGTTCATAATTGCTGTCCTCAGATACCTGCAGCTGAAACACAGAACATACCATCAATGGCTGAATGTCGGTTGtctggtgtttttttctgtcgGCTGCTTTGGGATGACGCTGATTGGAAACTTCCAGGTATTTACTGAGAAGATGATCCACAACGTTGGCACCTTAATGACGTTTGGACTGGGAACGCTGTACTGCTGGGTGCAGTCCTACATCACCCTGAGAGTGGATCTGAAGAATGAAGGGAGGAAGGCTGGGATCATCCGCTTCCTGTTGTCTGGATCCATCACCGTCTGCTTGATCCTCTACTTCTCCCTGAAGAGTCAGCGCCTCCACATGCAAGCAGCTCAGAGCCAGTGGGCGCTGGTCATGTTCTTCATCACCTTCCTCGGCACTTTTGCCATCGAGTTTCGCCACAACCGCTTCGACATCGTGTGCACAGACAACTCTGGGCGTACAGCGAGCCGGTCAGAGGCGCTCTCTGAAGCGTCCAGGTACCAGCCGGACCAAATGTTGGGATAAAGATATTCAGGTTAAACTGCAGGAGGCGCATGGATCAGCAACTTTGAGATGCATTTATTCCATCTTTTTTTACTCTACTCACTCTTACCAAATAATCACCACTTCATGTACGCATGTCTGACTGTAAGATATTTTTTATCTACAAACATTCAAAAGTAGAAAGTCATTGTACTCATTTCTCTTTATATGCAAggacactttttttaaacattacaaACGTCTACATGTTTTACTTGTCTATATCTACCTATAGATGTTATGAATCAAAACGCAAGTTTGCACAGTACGCAATCAGTATCAATAAAAAGACAGCAACATTGTT

Function

GO: NA

KEGG:

id description
K21846 TMEM150; transmembrane protein 150

RNA

RNA id representative length rna type GC content exon number start site end site
TU241524 False 459 lncRNA 0.49 4 28567208 28569483
XM_039779358.1 True 1398 mRNA 0.46 7 28567146 28572395

Neighbor

gene id symbol gene type direction distance location
LOC120545217 NA coding upstream 3029 28556910 ~ 28564117 (+)
sec31a sec31a coding upstream 15197 28526507 ~ 28551949 (+)
lin54 lin54 coding upstream 47273 28504277 ~ 28519873 (+)
LOC120545644 plac8,LOC106528717 coding upstream 74110 28490614 ~ 28493036 (+)
LOC120545883 plac8,LOC106528717 coding upstream 103133 28461584 ~ 28464013 (+)
mat2al LOC103371477,LOC108250364,LOC100699062,LOC102202437,LOC101466580,LOC102780929 coding downstream 23005 28595400 ~ 28607882 (+)
LOC120544911 NA coding downstream 36414 28608809 ~ 28631829 (+)
zswim6 LOC103369940,LOC100698789 coding downstream 97925 28670320 ~ 28718250 (+)
LOC120546066 LOC103369939,LOC102300272,LOC101486468,LOC102201162 coding downstream 181813 28754208 ~ 28768403 (+)
kmt5aa LOC104947636,LOC103369788,LOC104940038 coding downstream 325095 28897490 ~ 28904319 (+)
G178426 NA non-coding upstream 13045 28552827 ~ 28554101 (+)
LOC120545668 NA non-coding upstream 42306 28522284 ~ 28524840 (+)
G178348 NA non-coding upstream 355554 28211159 ~ 28211592 (+)
G178267 NA non-coding upstream 627398 27938904 ~ 27939748 (+)
G178266 NA non-coding upstream 634127 27932818 ~ 27933019 (+)
G178435 NA non-coding downstream 22197 28594592 ~ 28594932 (+)
G178439 NA non-coding downstream 67893 28640288 ~ 28640868 (+)
G178441 NA non-coding downstream 86090 28658485 ~ 28701406 (+)
G178460 NA non-coding downstream 255714 28828109 ~ 28832330 (+)
G178468 NA non-coding downstream 274076 28846471 ~ 28848883 (+)
lhfpl2a lhfpl2,LOC101175333 other upstream 869214 27656536 ~ 27697932 (+)
erbin erbin other upstream 1501440 27012889 ~ 27065706 (+)
nln nln other upstream 1555697 27002459 ~ 27011449 (+)
LOC120545040 LOC103353292 other upstream 1636852 26727810 ~ 26930294 (+)
LOC120546038 NA other upstream 1952187 26586647 ~ 26614959 (+)
LOC120544907 hnrnpd,LOC104960871 other downstream 7873 28580268 ~ 28588032 (+)
G178506 NA other downstream 372112 28944507 ~ 28945444 (+)
ptpn11a ptpn11 other downstream 434226 29006621 ~ 29083011 (+)
G178529 NA other downstream 512554 29084949 ~ 29092326 (+)
rasgrf2a NA other downstream 1029136 29601531 ~ 29667231 (+)

Expression


Co-expression Network