| Item | Value |
|---|---|
| gene id | LOC120544911 |
| gene name | NA |
| gene type | coding |
| species | eurasian perch (Perca fluviatilis) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_053128.1 |
| NCBI id | CM020925.1 |
| chromosome length | 37416781 |
| location | 28608809 ~ 28631829 (+) |
| genome version | GENO_Pfluv_1.0_2020_eurasian_perch_Genome |
| id | name | namespace |
|---|---|---|
| GO:0006355 | regulation of transcription, DNA-templated | biological_process |
| GO:0009636 | response to toxic substance | biological_process |
| GO:0030522 | intracellular receptor signaling pathway | biological_process |
| GO:0071407 | cellular response to organic cyclic compound | biological_process |
| GO:0071466 | cellular response to xenobiotic stimulus | biological_process |
| GO:0045944 | positive regulation of transcription by RNA polymerase II | biological_process |
| GO:0007165 | signal transduction | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0043565 | sequence-specific DNA binding | molecular_function |
| GO:0003677 | DNA binding | molecular_function |
| GO:0004871 | obsolete signal transducer activity | molecular_function |
| GO:0004874 | obsolete aryl hydrocarbon receptor activity | molecular_function |
| GO:0004879 | nuclear receptor activity | molecular_function |
| GO:0046983 | protein dimerization activity | molecular_function |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_039778781.1 | False | 4816 | mRNA | 0.47 | 11 | 28613034 | 28631829 |
| XM_039778782.1 | False | 3158 | mRNA | 0.52 | 11 | 28613031 | 28631829 |
| XM_039778783.1 | True | 5015 | mRNA | 0.47 | 11 | 28608809 | 28631829 |
| XM_039778785.1 | False | 4197 | mRNA | 0.47 | 7 | 28623601 | 28631829 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| mat2al | LOC103371477,LOC108250364,LOC100699062,LOC102202437,LOC101466580,LOC102780929 | coding | upstream | 927 | 28595400 ~ 28607882 (+) |
| LOC120545217 | NA | coding | upstream | 44692 | 28556910 ~ 28564117 (+) |
| sec31a | sec31a | coding | upstream | 56860 | 28526507 ~ 28551949 (+) |
| lin54 | lin54 | coding | upstream | 88936 | 28504277 ~ 28519873 (+) |
| LOC120545644 | plac8,LOC106528717 | coding | upstream | 115773 | 28490614 ~ 28493036 (+) |
| zswim6 | LOC103369940,LOC100698789 | coding | downstream | 38491 | 28670320 ~ 28718250 (+) |
| LOC120546066 | LOC103369939,LOC102300272,LOC101486468,LOC102201162 | coding | downstream | 122379 | 28754208 ~ 28768403 (+) |
| kmt5aa | LOC104947636,LOC103369788,LOC104940038 | coding | downstream | 265661 | 28897490 ~ 28904319 (+) |
| denr | denr | coding | downstream | 339571 | 28971400 ~ 28978927 (+) |
| LOC120545038 | denr,LOC100690406,LOC101472698,LOC103375039,LOC102800030 | coding | downstream | 347199 | 28979028 ~ 28981370 (+) |
| G178435 | NA | non-coding | upstream | 13877 | 28594592 ~ 28594932 (+) |
| G178426 | NA | non-coding | upstream | 54708 | 28552827 ~ 28554101 (+) |
| LOC120545668 | NA | non-coding | upstream | 83969 | 28522284 ~ 28524840 (+) |
| G178348 | NA | non-coding | upstream | 397217 | 28211159 ~ 28211592 (+) |
| G178267 | NA | non-coding | upstream | 669061 | 27938904 ~ 27939748 (+) |
| G178439 | NA | non-coding | downstream | 8459 | 28640288 ~ 28640868 (+) |
| G178441 | NA | non-coding | downstream | 26656 | 28658485 ~ 28701406 (+) |
| G178460 | NA | non-coding | downstream | 196280 | 28828109 ~ 28832330 (+) |
| G178468 | NA | non-coding | downstream | 214642 | 28846471 ~ 28848883 (+) |
| G178491 | NA | non-coding | downstream | 272644 | 28904473 ~ 28908371 (+) |
| LOC120544907 | hnrnpd,LOC104960871 | other | upstream | 20777 | 28580268 ~ 28588032 (+) |
| LOC120545218 | NA | other | upstream | 36414 | 28567146 ~ 28572395 (+) |
| lhfpl2a | lhfpl2,LOC101175333 | other | upstream | 910877 | 27656536 ~ 27697932 (+) |
| erbin | erbin | other | upstream | 1543103 | 27012889 ~ 27065706 (+) |
| nln | nln | other | upstream | 1597360 | 27002459 ~ 27011449 (+) |
| G178506 | NA | other | downstream | 312678 | 28944507 ~ 28945444 (+) |
| ptpn11a | ptpn11 | other | downstream | 374792 | 29006621 ~ 29083011 (+) |
| G178529 | NA | other | downstream | 453120 | 29084949 ~ 29092326 (+) |
| rasgrf2a | NA | other | downstream | 969702 | 29601531 ~ 29667231 (+) |
| G178845 | NA | other | downstream | 1110794 | 29742623 ~ 29750295 (+) |