lin54 (lin54)


Basic Information

Item Value
gene id lin54
gene name lin54
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 28504277 ~ 28519873 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039780475.1
TGACTTGTGAAATGTCAGGGAGGAATGGCGCTAGGCGCGGTATTTTGAACAATCGCCTTTTCCTTTCCTCGTTTTATCTGGAAACGTTGCCCAGCGTCAAAATCTTGGAGAGCTGAGACTTTGCAAGCATGGATGTGGTGTCGCCAGATCTCAACAGCCTCCTTCCTGATGAGATCATGGATACTGAGGCCATAGAGGACATCCCTCACGCCCAACCTGACAGCACCTCAGTCCAGTCAGAGCCCAACGATGACACCCCGGTCCCGATGGAAACGGATACACCCGCGGCTTCAGAAAATTTGAGCCTCTGTTCAAATGTCACTTCAACAGAACACACTCAGGCTCTCACCACGTCCGCCGCCACAGACACCATACTCGGCGTCAGTTCCGGAAGTCAGCTTCCGATGTCAATTTCCACTACGTCGTCATCCCTTCTTACCCTCAAACCAGGCATGGCTACTTCCATAGCCGCTACCAAAACTACAGATAGTTTGACTGGGACTAGTATCTCTACAGGTGGATTACAGAAGTTAACGGCTCCGTTTACCATCTCTGCTGCAAACCACCAGATCATTCTCAACAAGGTGGCCTCGTCTCAAGCCACAGAAGCAGCAAAGTCGGCAGGTACTCAACCGCAGGTCATCAAGCAGGAAGGACAAAAACTTTTGGTTACAGCAATAGGAAAGTCGGGGCAACCTATAGTGCTGCAGTTACCCCACACAGGCAGCAAGCCTGGCATTTCACAGATGTCAGGAGACCCCAAATCTCAAGCTCCACAGTTTaaagtgttgactattggtgggAGGTCGGAGCTGAAGCCAGTGATGGGGAGTGCTGGCAACCAGATGACCACATTACAGGCCCAGCAGCTGAAGACCTTACAGATTGCTAAGAAAACACCGACATCCTCCGCTGCGCCGATAAAGTTTATCATCACAAAAACTGTTAACAGCAAAGGTCTAAGTCCTCAGACAACAGTATCTCCTGTTATTGCGGGACGGGCCCTCACACAGAATTCCCCAGTGATGCCCCCGAGGACGATCACTCTGTCTGAGTCCCTCAACACTAGTATACAAAGCATCTCCGGCAAAAAGATTGCTATCTCACCCCTTAAGACTCCCAGCAAGGTGACGGTGGTATCTGTGGCTTCCCCGACCTCCAACGCCACTCAGAAGTCAGTGGCGCTGCCTGTGAATGTAGCACTCGGCCAGCAGATCCTCACAGTCCAGCAGTCCACATCTGCATCTCCAGTCAAGGTGGCCACCagccaaaacacaacacagAACATCAAACAAGTGCAGTCTGTGGCCGTGGGCGGAGTCGGCGGCTCTCAGTTCAAGACCATCATCCCACTGACCAGCCAGCCGAATGTGCAGCAGATTCAGGTCCCGGGGAGCAGGTTTCACTACGTCCGCCTCGTCACGGCAACCACAGCGAGCACCGTGGGACAGCCCAGTGGTCCCAGCACCAGCTCTTTACAGACAGCTAAACCTATGGTGGTCAGTACAGGAGCAGTCAGGATGTCTGTCCCGATCGTCCCAGCACAGACCATCAAACAGATGGCACCTAAACCCTTAACATCAGCAGCCGTAGTAACCACCACTCAGACCCAGCAACGCCTCATCATGCCTGCCACTCCACTGCCCCAGATCCAGCCCAACTTCACCAACCTCCCTCCCGGCACCGTGCTGGCCCCAGCTCCAGGAGGCGGGAACGTCGGCTATGCAGTCGTGCCAGCACAATATGTCACACAGCTCCAGCAGGCCCCATTTGTGACCCTCGCCAGCAGCTCTGGTTACCCCGCGTCCACTGCTATCCAGACTCAGGCCAGATTGCCACTCAATGGCTTGTCAACAGCAGAATCGACCTCAAGACCGAGGAAACCATGCAACTGCACCAAGTCACAGTGTCTCAAGCTATACTGTGACTGCTTTGCAAATGGAGAGTTCTGCAATAATTGTAACTGCAATAACTGCTTCAATAACTTGGAACATGAAACGGAACGTCAAAAAGCTATAAAGACGTGTCTGGAGCGCAACCCAGAGGCCTTCAAACCTAAAATTGGTAAAGGCAAAGAAGGAGAGTCAGACCGTCGACACAGCAAAGGCTGCAACTGCAAACGATCCGGCTGCCTGAAGAACTACTGCGAGTGTTACGAGGCGAAGATCATGTGCTCGTCCATTTGTAAGTGCGTTGGCTGCAAGAACTTTGAGGAGAGCCCGGAGAGGAAGACTCTGATGCACTTGGCTGATGCCGCAGAAGTCCGGGTACAGCAGCAGACCGCCGCTAAGACCAAGCTGTCGTCGCAGATCTCAGACCTGCTCATGCGGACGACGCCTGTTATTTCAAGTGGAGGGGGGAGGATGCCATATACGTTTGTAACAAAGGAGGTGCTCGAAGCGACGTGCGAGTGTCTACTGGAACAGGCCAAAAAGGCAGAACAGCCTCAGGTGGAAGCGGAGAGGATGATCCTGGAGGAGTTTGGACATTGCCTCATGAGGATAATCAGCTCGGCGGGGAAAGCCAAAGCAGACTGTGCCTCCATCAACTGCTAG
>XM_039780476.1
CCCTTTGCCCCAACTGGGACCACTTCTGTGGGTGTTTTTACATAAATGAGTGCAGCGCAGCTCAGTTTCTTTTGGTCCCTTTCATCCGAGGGACGCGAAAACAAAGAGCAGTTAGCTGTGTAGAGCTGAGACTTTGCAAGCATGGATGTGGTGTCGCCAGATCTCAACAGCCTCCTTCCTGATGAGATCATGGATACTGAGGCCATAGAGGACATCCCTCACGCCCAACCTGACAGCACCTCAGTCCAGTCAGAGCCCAACGATGACACCCCGGTCCCGATGGAAACGGATACACCCGCGGCTTCAGAAAATTTGAGCCTCTGTTCAAATGTCACTTCAACAGAACACACTCAGGCTCTCACCACGTCCGCCGCCACAGACACCATACTCGGCGTCAGTTCCGGAAGTCAGCTTCCGATGTCAATTTCCACTACGTCGTCATCCCTTCTTACCCTCAAACCAGGCATGGCTACTTCCATAGCCGCTACCAAAACTACAGATAGTTTGACTGGGACTAGTATCTCTACAGGTGGATTACAGAAGTTAACGGCTCCGTTTACCATCTCTGCTGCAAACCACCAGATCATTCTCAACAAGGTGGCCTCGTCTCAAGCCACAGAAGCAGCAAAGTCGGCAGGTACTCAACCGCAGGTCATCAAGCAGGAAGGACAAAAACTTTTGGTTACAGCAATAGGAAAGTCGGGGCAACCTATAGTGCTGCAGTTACCCCACACAGGCAGCAAGCCTGGCATTTCACAGATGTCAGGAGACCCCAAATCTCAAGCTCCACAGTTTaaagtgttgactattggtgggAGGTCGGAGCTGAAGCCAGTGATGGGGAGTGCTGGCAACCAGATGACCACATTACAGGCCCAGCAGCTGAAGACCTTACAGATTGCTAAGAAAACACCGACATCCTCCGCTGCGCCGATAAAGTTTATCATCACAAAAACTGTTAACAGCAAAGGTCTAAGTCCTCAGACAACAGTATCTCCTGTTATTGCGGGACGGGCCCTCACACAGAATTCCCCAGTGATGCCCCCGAGGACGATCACTCTGTCTGAGTCCCTCAACACTAGTATACAAAGCATCTCCGGCAAAAAGATTGCTATCTCACCCCTTAAGACTCCCAGCAAGGTGACGGTGGTATCTGTGGCTTCCCCGACCTCCAACGCCACTCAGAAGTCAGTGGCGCTGCCTGTGAATGTAGCACTCGGCCAGCAGATCCTCACAGTCCAGCAGTCCACATCTGCATCTCCAGTCAAGGTGGCCACCagccaaaacacaacacagAACATCAAACAAGTGCAGTCTGTGGCCGTGGGCGGAGTCGGCGGCTCTCAGTTCAAGACCATCATCCCACTGACCAGCCAGCCGAATGTGCAGCAGATTCAGGTCCCGGGGAGCAGGTTTCACTACGTCCGCCTCGTCACGGCAACCACAGCGAGCACCGTGGGACAGCCCAGTGGTCCCAGCACCAGCTCTTTACAGACAGCTAAACCTATGGTGGTCAGTACAGGAGCAGTCAGGATGTCTGTCCCGATCGTCCCAGCACAGACCATCAAACAGATGGCACCTAAACCCTTAACATCAGCAGCCGTAGTAACCACCACTCAGACCCAGCAACGCCTCATCATGCCTGCCACTCCACTGCCCCAGATCCAGCCCAACTTCACCAACCTCCCTCCCGGCACCGTGCTGGCCCCAGCTCCAGGAGGCGGGAACGTCGGCTATGCAGTCGTGCCAGCACAATATGTCACACAGCTCCAGCAGGCCCCATTTGTGACCCTCGCCAGCAGCTCTGGTTACCCCGCGTCCACTGCTATCCAGACTCAGGCCAGATTGCCACTCAATGGCTTGTCAACAGCAGAATCGACCTCAAGACCGAGGAAACCATGCAACTGCACCAAGTCACAGTGTCTCAAGCTATACTGTGACTGCTTTGCAAATGGAGAGTTCTGCAATAATTGTAACTGCAATAACTGCTTCAATAACTTGGAACATGAAACGGAACGTCAAAAAGCTATAAAGACGTGTCTGGAGCGCAACCCAGAGGCCTTCAAACCTAAAATTGGTAAAGGCAAAGAAGGAGAGTCAGACCGTCGACACAGCAAAGGCTGCAACTGCAAACGATCCGGCTGCCTGAAGAACTACTGCGAGTGTTACGAGGCGAAGATCATGTGCTCGTCCATTTGTAAGTGCGTTGGCTGCAAGAACTTTGAGGAGAGCCCGGAGAGGAAGACTCTGATGCACTTGGCTGATGCCGCAGAAGTCCGGGTACAGCAGCAGACCGCCGCTAAGACCAAGCTGTCGTCGCAGATCTCAGACCTGCTCATGCGGACGACGCCTGTTATTTCAAGTGGAGGGGGGAGGATGCCATATACGTTTGTAACAAAGGAGGTGCTCGAAGCGACGTGCGAGTGTCTACTGGAACAGGCCAAAAAGGCAGAACAGCCTCAGGTGGAAGCGGAGAGGATGATCCTGGAGGAGTTTGGACATTGCCTCATGAGGATAATCAGCTCGGCGGGGAAAGCCAAAGCAGACTGTGCCTCCATCAACTGCTAG
>XM_039780478.1
ATGGATGTGGTGTCGCCAGATCTCAACAGCCTCCTTCCTGATGAGATCATGGATACTGAGGCCATAGAGGACATCCCTCACGCCCAACCTGACAGCACCTCAGTCCAGTCAGAGCCCAACGATGACACCCCGGTCCCGATGGAAACGGATACACCCGCGGCTTCAGAAAATTTGAGCCTCTGTTCAAATGTCACTTCAACAGAACACACTCAGGCTCTCACCACGTCCGCCGCCACAGACACCATACTCGGCGTCAGTTCCGGAAGTCAGCTTCCGATGTCAATTTCCACTACGTCGTCATCCCTTCTTACCCTCAAACCAGGCATGGCTACTTCCATAGCCGCTACCAAAACTACAGATAGTTTGACTGGGACTAGTATCTCTACAGGTGGATTACAGAAGTTAACGGCTCCGTTTACCATCTCTGCTGCAAACCACCAGATCATTCTCAACAAGGTGGCCTCGTCTCAAGCCACAGAAGCAGCAAAGTCGGCAGGTACTCAACCGCAGGTCATCAAGCAGGAAGGACAAAAACTTTTGGTTACAGCAATAGGAAAGTCGGGGCAACCTATAGTGCTGCAGTTACCCCACACAGGCAGCAAGCCTGGCATTTCACAGATGTCAGGAGACCCCAAATCTCAAGCTCCACAGTTTaaagtgttgactattggtgggAGGTCGGAGCTGAAGCCAGTGATGGGGAGTGCTGGCAACCAGATGACCACATTACAGGCCCAGCAGCTGAAGACCTTACAGATTGCTAAGAAAACACCGACATCCTCCGCTGCGCCGATAAAGTTTATCATCACAAAAACTGTTAACAGCAAAGGTCTAAGTCCTCAGACAACAGTATCTCCTGTTATTGCGGGACGGGCCCTCACACAGAATTCCCCAGTGATGCCCCCGAGGACGATCACTCTGTCTGAGTCCCTCAACACTAGTATACAAAGCATCTCCGGCAAAAAGATTGCTATCTCACCCCTTAAGACTCCCAGCAAGGTGACGGTGGTATCTGTGGCTTCCCCGACCTCCAACGCCACTCAGAAGTCAGTGGCGCTGCCTGTGAATGTAGCACTCGGCCAGCAGATCCTCACAGTCCAGCAGTCCACATCTGCATCTCCAGTCAAGGTGGCCACCagccaaaacacaacacagAACATCAAACAAGTGCAGTCTGTGGCCGTGGGCGGAGTCGGCGGCTCTCAGTTCAAGACCATCATCCCACTGACCAGCCAGCCGAATGTGCAGCAGATTCAGGTCCCGGGGAGCAGGTTTCACTACGTCCGCCTCGTCACGGCAACCACAGCGAGCACCGTGGGACAGCCCAGTGGTCCCAGCACCAGCTCTTTACAGACAGCTAAACCTATGGTGGTCAGTACAGGAGCAGTCAGGATGTCTGTCCCGATCGTCCCAGCACAGACCATCAAACAGATGGCACCTAAACCCTTAACATCAGCAGCCGTAGTAACCACCACTCAGACCCAGCAACGCCTCATCATGCCTGCCACTCCACTGCCCCAGATCCAGCCCAACTTCACCAACCTCCCTCCCGGCACCGTGCTGGCCCCAGCTCCAGGAGGCGGGAACGTCGGCTATGCAGTCGTGCCAGCACAATATGTCACACAGCTCCAGCAGGCCCCATTTGTGACCCTCGCCAGCAGCTCTGGTTACCCCGCGTCCACTGCTATCCAGACTCAGGCCAGATTGCCACTCAATGGCTTGTCAACAGCAGAATCGACCTCAAGACCGAGGAAACCATGCAACTGCACCAAGTCACAGTGTCTCAAGCTATACTGTGACTGCTTTGCAAATGGAGAGTTCTGCAATAATTGTAACTGCAATAACTGCTTCAATAACTTGGAACATGAAACGGAACGTCAAAAAGCTATAAAGACGTGTCTGGAGCGCAACCCAGAGGCCTTCAAACCTAAAATTGGTAAAGGCAAAGAAGGAGAGTCAGACCGTCGACACAGCAAAGGCTGCAACTGCAAACGATCCGGCTGCCTGAAGAACTACTGCGAGTGTTACGAGGCGAAGATCATGTGCTCGTCCATTTGTAAGTGCGTTGGCTGCAAGAACTTTGAGGAGAGCCCGGAGAGGAAGACTCTGATGCACTTGGCTGATGCCGCAGAAGTCCGGGTACAGCAGCAGACCGCCGCTAAGACCAAGCTGTCGTCGCAGATCTCAGACCTGCTCATGCGGACGACGCCTGTTATTTCAAGTGGAGGGGGGAGGATGCCATATACGTTTGTAACAAAGGAGGTGCTCGAAGCGACGTGCGAGTGTCTACTGGAACAGGCCAAAAAGGCAGAACAGCCTCAGGTGGAAGCGGAGAGGATGATCCTGGAGGAGTTTGGACATTGCCTCATGAGGATAATCAGCTCGGCGGGGAAAGCCAAAGCAGACTGTGCCTCCATCAACTGCTAGGCCGAGCACTCTGGCTCTCTCCGCCCTCTTAACCCGAGCCCAGCTGTGGGGGGGCCGAGAGGCAGGGATTACTATGCACTCCCTGTCTCAGACCCCCCGCGTGGGGTTGTCTCCCTCATCAAGAAGGCCAAACAATGGCCTGAAAGTAGATTCCCCTGCATTGGGCGAGCTAAGGCCAGCTGGAATAATAAACATGGAACAGTTGTTCGCAAACTGAAGGACAAATGGACAGAGCACCCCGCCTCTGATGGACTTTCAAAGCTGTTCTCACACTTTGTTCACCTGGCTGTCATGGACAGAAATGACTCTGAGCAAGGCGGTGCTGAACAGGGATTTAAACGTTTCTTCACTTTATTTTCCCTACAGGGCCCTTTtgttctattttcttttattctttcccctttttttttcttttttttgttgaggaTTTTGGAAAAGAAATGCCTGTAATTTTGATGTATTAATTTGTGCTTACAGTAGACAAACAGAACATGTATCTTTTGATATTTATTTTGACAAGTATTTGTAATCATTGTGAGCGCTAATATTGTGTGGCTTATAGTGCCGCAAACTATTAATTCTTAACTAAGGCTAGGCTAAATTGTTTCAATAAAAAATGAGTAGGGGCGCTCCTTAGGTTTATCCCTAAAGGTAATTGTAAGATGAATGCACACACATAATTAattatgcgcacacacacacccactcacaGAGCTTTGCTCAGAATAGTTGGAACATGGCTAGATTGGtggtttgttttctgtgttaTCAGTTACAGTGTTTACTGTACATTAAAACCACCATGAACAATGGA

Function

symbol description
lin54 Predicted to enable DNA binding activity and metal ion binding activity. Predicted to be involved in regulation of transcription, DNA-templated. Predicted to be active in nucleus. Orthologous to human LIN54 (lin-54 DREAM MuvB core complex component).

NR:

description
PREDICTED: protein lin-54 homolog

GO: NA

KEGG:

id description
K21776 LIN54; protein lin-54

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039780475.1 False 2555 mRNA 0.53 14 28504277 28519059
XM_039780476.1 False 2568 mRNA 0.53 14 28505608 28519059
XM_039780478.1 True 3241 mRNA 0.51 13 28506748 28519873

Neighbor

gene id symbol gene type direction distance location
LOC120545644 plac8,LOC106528717 coding upstream 11241 28490614 ~ 28493036 (+)
LOC120545883 plac8,LOC106528717 coding upstream 40264 28461584 ~ 28464013 (+)
cwc27 cwc27 coding upstream 129110 28346148 ~ 28375167 (+)
trim23 trim23,LOC102785252 coding upstream 165963 28327180 ~ 28338314 (+)
LOC120546064 gcnt4,LOC103373574 coding upstream 296320 28204951 ~ 28207957 (+)
sec31a sec31a coding downstream 6634 28526507 ~ 28551949 (+)
LOC120545217 NA coding downstream 37037 28556910 ~ 28564117 (+)
mat2al LOC103371477,LOC108250364,LOC100699062,LOC102202437,LOC101466580,LOC102780929 coding downstream 75527 28595400 ~ 28607882 (+)
LOC120544911 NA coding downstream 88936 28608809 ~ 28631829 (+)
zswim6 LOC103369940,LOC100698789 coding downstream 150447 28670320 ~ 28718250 (+)
G178348 NA non-coding upstream 292685 28211159 ~ 28211592 (+)
G178267 NA non-coding upstream 564529 27938904 ~ 27939748 (+)
G178266 NA non-coding upstream 571258 27932818 ~ 27933019 (+)
G178256 NA non-coding upstream 690399 27813483 ~ 27813878 (+)
G178210 NA non-coding upstream 798214 27702859 ~ 27706063 (+)
LOC120545668 NA non-coding downstream 2411 28522284 ~ 28524840 (+)
G178426 NA non-coding downstream 32954 28552827 ~ 28554101 (+)
G178435 NA non-coding downstream 74719 28594592 ~ 28594932 (+)
G178439 NA non-coding downstream 120415 28640288 ~ 28640868 (+)
G178441 NA non-coding downstream 138612 28658485 ~ 28701406 (+)
lhfpl2a lhfpl2,LOC101175333 other upstream 806345 27656536 ~ 27697932 (+)
erbin erbin other upstream 1438571 27012889 ~ 27065706 (+)
nln nln other upstream 1492828 27002459 ~ 27011449 (+)
LOC120545040 LOC103353292 other upstream 1573983 26727810 ~ 26930294 (+)
LOC120546038 NA other upstream 1889318 26586647 ~ 26614959 (+)
LOC120545218 NA other downstream 47273 28567146 ~ 28572395 (+)
LOC120544907 hnrnpd,LOC104960871 other downstream 60395 28580268 ~ 28588032 (+)
G178506 NA other downstream 424634 28944507 ~ 28945444 (+)
ptpn11a ptpn11 other downstream 486748 29006621 ~ 29083011 (+)
G178529 NA other downstream 565076 29084949 ~ 29092326 (+)

Expression


Co-expression Network