nln (nln)


Basic Information

Item Value
gene id nln
gene name nln
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 27002459 ~ 27011449 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU241015
cacagcaGCCCTCATGCAGATACAGCTGAGGTGTTTGCAAAGCACTGTAAGGAAATCCTGGGCGTTCCTGCTACGCCAGGTACCAATATGACAGCCAGTTTCAGCCACTTGGTTGGAGGATATGATGGCCAGTACTACAGCTATCTGTGGAGTGAAGTCTACTCCATGGACATTTATTTCAATCGTTTTAAAAAGGAAGGCATTATGAATCCAAAGGTTGGACAAGAGTACAGAAGGGTGATTCTGGAAACTGGTGGCTCTGTGGATGGCATGGACATGCTGAAAACCTTCCTTGGCCGTGGCCCATGCCAGGATGCCTTCTTTCAGTGCAAAGGACTGATTAAGTCACAGGAAACACAGACGTTGTAATTTGATATATTCTTTAAGAGTCTTTTTGTCAAAGCAATGTATATTTTAATTGTCTAGATGCAGCAGGGCTATGTCAGTAGAAACATGGCTTTGCTTGAAGTGTATTAATGCTGCGTTTTTAAGCGTTTCTACTTGATGATTTGTAACTGTTGGTATTTGTTCAAATGTACAGTAGATCATTGAGGGTCTTATGATGTTATGTACAATTGGCCTTTTTCACATGTGTTACTAATACCATTAACGATGGCTTTGTTTTATTCAAGCGTCCCATTAAGCGATGGCAAAAGACAATACTATGACCCTTAAAACAAAGCAGCTAAAATGGAATTCCACCAGCATTAATTTAATTGTTTACGCCTTTGCTTGTCCTACTTTGACATGTGAAGATGTCTCAATTTGTGCACAGCTGC
>XM_039780573.1
AATAAGCGTTTTCACATTTCAAAGAGGAGGGGGAGaccgttgctgctgctgctgctgctctgtttGGACTGAGCTACAGTAAGAGgagaataaagaaaaatatttcCTTTTGCACGATAAAACTCATGCAACCGCTGGCATGTTAAGAGTTTTAGTCTGCCAAGCGCTTTTCAGCGTCTCTAAACCTCTCCTGAGAATGACCATCCACAACGGGTCTGTGACATGTGCCAGAGACTGCTCTCAGGCAGGAAATAAGAGAAACGCGCTGAGATGGGACCTGACCCCAGACGATATCAGCACCATGACAGACAGCCTGATTAACAGAGTAAAGGCGGTCTACGATGACGTTGGATCTCTAAAGATAGAAAACATGTCTGTTGAAAACACCCTGAAAGCCTTGGCTTATGCCAAACTGGATTATGCATCATCACTCCACGTTCTTGATTTCCCCCAGTATGTATGTCCCTCTAAAGAAGTTCGGACAGCGAGCACCGAGGCGGACAAGAAACTGTCTGAGTTTGATGTGGAGATGAGTATGAGGGAAGATGTGTTCAAGCGAATTACAGCCTTGCAGaaAAAGCATCAAGACAATCTTTTACCCGAAGAAAAGAGGTTTTTAGACAGACTTGTTACATTAGGCAAGCGGAAAGGATTGCACCTGTCTAAAGATATACAAGAGGACATAAAAAGAACCTCCAAGCGTATAAGTGCACTCTCCATAGAGTTTAACAAGAATCTGAATGAGGACAATACGTTTCTTGTTTTTTCTGAGCGCGAATTGGGTGGGCTAGCTGATAGCTATCTCAATGGACTGGACATGACCGAAGATGGGCGGTATAAGGTGACACTTGAATATCCCCATTACTACCCCCTGATGAAGAGGTGTTACAATCCTGAGACCAGGAGGAAGATGGAAACGGCTTTTCACAGCAGGTGTAAAGAGgtcAACACAGCGATCCTCGAAGAATTGATACAACTCAAAGCATATGTCGCGGACTTACTTGGTTATAGTTGCCATGCAAACTATGTGCTGGAGATTAACATGGCCAAGAATGCAAGCAATGTATCTGACTTTCTTGACACATTCTATGAAACACTTAAGCCCATTGGAATGAAGGAGAGGAAATATATTCTTGCACTAAAGAAGCGCGAGTGCTTGatgaagggctaccagtttgatggACAGATCAATGCCTGGGACTTGCCCTACTACATGAATCAAGTGGAGCAGTGCAAGTTTGCCGTGAACAAGGATAAACTGATTGAGTATTTCCCACTTGACGTGGTGACAGAAGGACTGTTTGGAATCTACCAGGAGCTGCTGGGTCTCACTTTCAACGAGGTGGAGCATGCTCATGtgtggcatgaaaatgtcaagCTTTATTCAGCCTTGGACACTGAAACAGGAGAGGAGATTGGCCAGTTTTACCTGGACTTGCATCCAAGGGAAGGAAAGTATGGCCATGCAGCCTGCTTTGGGCTCCAGCCTGGCTGCAGAGGACCTGATGGAAAACGCAGACTTCCAGTGGCGGCTATGGTGGCTAACTTTACCAAGTCCAGAAAAGGTTGTCCCTCTCTTCTCCAGCACCATGAAGTGGAGACTTATTTTCACGAGTTTGGTCACGTTATGCACGAGCTCTGTTCTAAGaCCACTTTCTCAGAATTCAGTGGAACCCTGGTGGAGACAGACTTTGTGGAGGTGCCTTCGCAGATGCTTGAGAACTGGGTTTGGGAGAAAGAGCCTCTGAGGAGAATGTCTCGCCACTACAAGGATGGCACCCCAACCCcacaaaaccccccccccaaacatttttctcccccccccccccccacccctcctcaaaatttttttaaaaaaaaaaaaaatatccacagcaGCCCTCATGCAGATACAGCTGAGGTGTTTGCAAAGCACTGTAAGGAAATCCTGGGCGTTCCTGCTACGCCAGGTACCAATATGACAGCCAGTTTCAGCCACTTGGTTGGAGGATATGATGGCCAGTACTACAGCTATCTGTGGAGTGAAGTCTACTCCATGGACATTTATTTCAATCGTTTTAAAAAGGAAGGCATTATGAATCCAAAGGTTGGACAAGAGTACAGAAGGGTGATTCTGGAAACTGGTGGCTCTGTGGATGGCATGGACATGCTGAAAACCTTCCTTGGCCGTGGCCCATGCCAGGATGCCTTCTTTCAGTGCAAAGGACTGATTAAGTCACAGGAAACACAGACGTTGTAATTTGATATATTCTTTAAGAGTCTTTTTGTCAAAGCAATGTATATTTTAATTGTCTAGATGCAGCAGGGCTATGTCAGTAGAAACATGGCTTTGCTTGAAGTGTATTAATGCTGCGTTTTTAAGCGTTTCTACTTGATGATTTGTAACTGTTGGTATTTGTTCAAATGTACAGTAGATCATTGAGGGTCTTATGATGTTATGTACAATTGGCCTTTTTCACATGTGTTACTAATACCATTAACGATGGCTTTGTTTTATTCAAGCGTCCCATTAAGCGATGGCAAAAGACAATACTATGACCCTTAAAACAAAGCAGCTAAAATGGAATTCCACCAGCATTAATTTAATTGTTTACGCCTTTGCTTGTCCTACTTTGACATGTGAAGATGTCTCAATTTGTGCACAGCTGCAAGTTATCATTGTAAAaatgcttattttttaaagtgataAAGCTTTTGATTACA

Function

symbol description
nln Predicted to enable metalloendopeptidase activity. Predicted to be involved in peptide metabolic process and proteolysis. Predicted to be active in mitochondrial intermembrane space. Is expressed in hypaxial myotome region; musculature system; myotome; and pectoral fin musculature. Orthologous to human NLN (neurolysin).

NR:

description
neurolysin, mitochondrial-like isoform X2

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0046872 metal ion binding molecular_function
GO:0004222 metalloendopeptidase activity molecular_function

KEGG:

id description
K01284 dcp; peptidyl-dipeptidase Dcp

RNA

RNA id representative length rna type GC content exon number start site end site
TU241015 False 779 TUCP 0.41 3 27010197 27011395
XM_039780573.1 True 2703 mRNA 0.44 13 27002459 27011449

Neighbor

gene id symbol gene type direction distance location
trappc13 trappc13 coding upstream 9680 26981156 ~ 26992779 (+)
LOC120545882 NA coding upstream 23276 26977461 ~ 26979183 (+)
LOC120545850 NA coding upstream 27074 26973755 ~ 26975385 (+)
LOC120545041 LOC104936786,LOC103353268,LOC104946837 coding upstream 36336 26940154 ~ 26966123 (+)
zgc:162472 NA coding upstream 416246 26566849 ~ 26586213 (+)
srek1 srek1,LOC106947217,LOC103154506,LOC106917056 coding downstream 65061 27076510 ~ 27091059 (+)
mast4 mast4,LOC103371489 coding downstream 99304 27110753 ~ 27212141 (+)
pik3r1 pik3r1,LOC104930938,LOC103371488,LOC102795099,LOC105915567,LOC102216923 coding downstream 224083 27235532 ~ 27261602 (+)
LOC120545398 homer1,LOC102798051 coding downstream 527991 27539440 ~ 27568109 (+)
dmgdh dmgdh coding downstream 599353 27610802 ~ 27631081 (+)
LOC120546076 NA non-coding upstream 309571 26691381 ~ 26692888 (+)
G177937 NA non-coding upstream 487497 26514526 ~ 26514962 (+)
G177876 NA non-coding upstream 628771 26369841 ~ 26373688 (+)
G177874 NA non-coding upstream 641187 26360394 ~ 26361272 (+)
G177802 nsa2 non-coding upstream 1004761 25995444 ~ 25997698 (+)
G178045 NA non-coding downstream 93329 27104778 ~ 27105030 (+)
G178155 NA non-coding downstream 460462 27471911 ~ 27513908 (+)
G178166 tia1,LOC100703764,LOC102796970,LOC103362264,LOC101155125 non-coding downstream 505374 27516823 ~ 27524148 (+)
G178198 NA non-coding downstream 559104 27570553 ~ 27573678 (+)
G178205 LOC103362269,LOC105918759 non-coding downstream 596031 27607480 ~ 27608213 (+)
LOC120545040 LOC103353292 other upstream 72165 26727810 ~ 26930294 (+)
LOC120546038 NA other upstream 387500 26586647 ~ 26614959 (+)
LOC120545651 mol1a,LOC100706667,LOC102220180,LOC105027268,LOC103353284,LOC106562938,LOC103389989 other upstream 590446 26336307 ~ 26412013 (+)
G177848 btf3,LOC104954705,LOC107080991 other upstream 757568 26219481 ~ 26244891 (+)
G177809 hexb,LOC102784651 other upstream 980628 26018164 ~ 26021831 (+)
erbin erbin other downstream 1440 27012889 ~ 27065706 (+)
lhfpl2a lhfpl2,LOC101175333 other downstream 645087 27656536 ~ 27697932 (+)
LOC120545218 NA other downstream 1555697 28567146 ~ 28572395 (+)
LOC120544907 hnrnpd,LOC104960871 other downstream 1568819 28580268 ~ 28588032 (+)
G178506 NA other downstream 1933058 28944507 ~ 28945444 (+)

Expression


Co-expression Network