trappc13 (trappc13)


Basic Information

Item Value
gene id trappc13
gene name trappc13
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 26981156 ~ 26992779 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039780711.1
gcTTCCTGTAAGGTCAAAGTTCAACTGCTAGCCTAtcatagctagctagcatagTAGCAACACCACCCCGATAAGATAGTTTACTCTGTCACAATGGAAGTAAATCAAGCGAAACAAGAACACCTACTCGCATTAAAAGTGATGCGGTTAACAAAACCGACACTCTTCACAAACTTGCCAGTGACATGCGAAGATCGAGATCTGCCAGGGGATTTATTTGCTCAGCTTATGAAGGAGGACCCCTCCACCATCAAAGGAGCAGAGGCTTTAATGCTCGGAGAGATGCTTACATTACCGCAAAACTTTGGAAATATTTTCCTTGGCGAGACCTTCTCCAGTTACATCAGTGTGCACAATGACAGCAACCAAGTTGTGAAGGACATTCTTGTGAAgGCTGATCTACAGACCAGCTCACAGAGGCTCAACCTCTCGGCGTCAAACTCCGCAGTAGGCGAACTCAAACCTGAATGCTGCATTGACGATGTTATCCACCACGAAGTCAAAGAAATTGGAACACATATCTTAGTTTGTGCTGTCAGTTACACCACTCAGTACGGGGAGAAGCTCTATTTTCGGAAGTTCTTCAAATTCCAGTGTGAGAAAACGACCGCATTCAGTTTGCACTCTATTTTCAATCAGGTTTTGAAGCCGTTGGATGTGAAGACAAAGTTCTACAATGCAGAGAGTGACCTCAGTTCTGTGACAGACGAAGTGTTCCTGGAGGCTCAGATCCAGAACATCACCACGTCTGCGATGTTCATGGAGAAGGTCTCTCTCGAGCCCTCCATGATGTACAACGTCACAGAGCTCAACACGGTCGCAAGTGGAGAAgatggAGAGTCCACATTTGGGAAAATGTCCTACCTGCAGCCCATGGACACAAGGCAGTACCTGTACTGCCTGAAGCCAAAGCCAGAGTACGCGGAGAAGGCAGGCGTCATCAAGGGTGTGACGGTGATAGGGAAGCTTGACATCGTATGGAAGACTAATCtcggggagagagggaggctgCAGACCAGTCAGCTGCAAAGAATGGCTCCAGGGTATGGAGACATCAGGTTGTCTTTGGAGATGATTCCTGACACTGTCAACCTTGAAGAACCTTTTGACATTATCTGTAAAATCACCAACTGCAGCGAAAGAACCATGGACTTGGTGCTGGAGATGTGTAACACCAGGTCCATCCACTGGTGCGGTGTATCAGGGCGACAGCTGGGGAAACTCAGTCCCGGTGCCTTCCTCTCTCTGCCCCTCATACTCCTCTCATCCGTCCAGGGTCTGCAGAGTATTTCTGGATTGAGACTCACAGATACCTTTCTGAAGAGGACGTACGAATATGACGACATCGCAcaagtgtgtgttgtctgcccATATACGAACAATGAGTGCTAGACATTTTATTTCGCTTTTTGCATTTTAGATATGAATGGACCAACGGTGGAATTCTGCACTGACATTTCACTCTTTTTGCAACCTGATGGgattatactgtattttaaaataaattgtgaaTAATATGAATCACTTTCTTTGCAAATAATTATGTAAATGTGCataaatgttaataaaaaaacatcggTCATCTTT
>XM_039780713.1
gcTTCCTGTAAGGTCAAAGTTCAACTGCTAGCCTAtcatagctagctagcatagTAGCAACACCACCCCGATAAGATAGTTTACTCTGTCACAATGGAAGTAAATCAAGCGAAACAAGAACACCTACTCGCATTAAAAGTGATGCGGTTAACAAAACCGACACTCTTCACAAACTTGCCAGTGACATGCGAAGATCGAGATCTGCCAGGGGATTTATTTGCTCAGCTTATGAAGGAGGACCCCTCCACCATCAAAGGAGCAGAGGCTTTAATGCTCGGAGAGATGCTTACATTACCGCAAAACTTTGGAAATATTTTCCTTGGCGAGACCTTCTCCAGTTACATCAGTGTGCACAATGACAGCAACCAAGTTGTGAAGGACATTCTTGTGAAgGCTGATCTACAGACCAGCTCACAGAGGCTCAACCTCTCGGCGTCAAACTCCGCAGTAGGCGAACTCAAACCTGAATGCTGCATTGACGATGTTATCCACCACGAAGTCAAAGAAATTGGAACACATATCTTAGTTTGTGCTGTCAGTTACACCACTCAGTACGGGGAGAAGCTCTATTTTCGGAAGTTCTTCAAATTCCAGTGTGAGAAAACGACCGCATTCAGTTTGCACTCTATTTTCAATCAGGTTTTGAAGCCGTTGGATGTGAAGACAAAGTTCTACAATGCAGAGACAGACGAAGTGTTCCTGGAGGCTCAGATCCAGAACATCACCACGTCTGCGATGTTCATGGAGAAGGTCTCTCTCGAGCCCTCCATGATGTACAACGTCACAGAGCTCAACACGGTCGCAAGTGGAGAAgatggAGAGTCCACATTTGGGAAAATGTCCTACCTGCAGCCCATGGACACAAGGCAGTACCTGTACTGCCTGAAGCCAAAGCCAGAGTACGCGGAGAAGGCAGGCGTCATCAAGGGTGTGACGGTGATAGGGAAGCTTGACATCGTATGGAAGACTAATCtcggggagagagggaggctgCAGACCAGTCAGCTGCAAAGAATGGCTCCAGGGTATGGAGACATCAGGTTGTCTTTGGAGATGATTCCTGACACTGTCAACCTTGAAGAACCTTTTGACATTATCTGTAAAATCACCAACTGCAGCGAAAGAACCATGGACTTGGTGCTGGAGATGTGTAACACCAGGTCCATCCACTGGTGCGGTGTATCAGGGCGACAGCTGGGGAAACTCAGTCCCGGTGCCTTCCTCTCTCTGCCCCTCATACTCCTCTCATCCGTCCAGGGTCTGCAGAGTATTTCTGGATTGAGACTCACAGATACCTTTCTGAAGAGGACGTACGAATATGACGACATCGCAcaagtgtgtgttgtctgcccATATACGAACAATGAGTGCTAGACATTTTATTTCGCTTTTTGCATTTTAGATATGAATGGACCAACGGTGGAATTCTGCACTGACATTTCACTCTTTTTGCAACCTGATGGgattatactgtattttaaaataaattgtgaaTAATATGAATCACTTTCTTTGCAAATAATTATGTAAATGTGCataaatgttaataaaaaaacatcggTCATCTTT
>XM_039780714.1
gcTTCCTGTAAGGTCAAAGTTCAACTGCTAGCCTAtcatagctagctagcatagTAGCAACACCACCCCGATAAGATAGTTTACTCTGTCACAATGGAAGTAAATCAAGCGAAACAAGAACACCTACTCGCATTAAAAGTGATGCGGTTAACAAAACCGACACTCTTCACAAACTTGCCAGTGACATGCGAAGATCGAGATCTGCCAGGGGATTTATTTGCTCAGCTTATGAAGGAGGACCCCTCCACCATCAAAGGAGCAGAGGCTTTAATGCTCGGAGAGATGCTTACATTACCGCAAAACTTTGGAAATATTTTCCTTGGCGAGACCTTCTCCAGTTACATCAGTGTGCACAATGACAGCAACCAAGTTGTGAAGGACATTCTTGTGAAgGCTGATCTACAGACCAGCTCACAGAGGCTCAACCTCTCGGCGTCAAACTCCGCAGTAGGCGAACTCAAACCTGAATGCTGCATTGACGATGTTATCCACCACGAAGTCAAAGAAATTGGAACACATATCTTAGTTTGTGCTGTCAGTTACACCACTCAGTACGGGGAGAAGCTCTATTTTCGGAAGTTCTTCAAATTCCAGGTTTTGAAGCCGTTGGATGTGAAGACAAAGTTCTACAATGCAGAGAGTGACCTCAGTTCTGTGACAGACGAAGTGTTCCTGGAGGCTCAGATCCAGAACATCACCACGTCTGCGATGTTCATGGAGAAGGTCTCTCTCGAGCCCTCCATGATGTACAACGTCACAGAGCTCAACACGGTCGCAAGTGGAGAAgatggAGAGTCCACATTTGGGAAAATGTCCTACCTGCAGCCCATGGACACAAGGCAGTACCTGTACTGCCTGAAGCCAAAGCCAGAGTACGCGGAGAAGGCAGGCGTCATCAAGGGTGTGACGGTGATAGGGAAGCTTGACATCGTATGGAAGACTAATCtcggggagagagggaggctgCAGACCAGTCAGCTGCAAAGAATGGCTCCAGGGTATGGAGACATCAGGTTGTCTTTGGAGATGATTCCTGACACTGTCAACCTTGAAGAACCTTTTGACATTATCTGTAAAATCACCAACTGCAGCGAAAGAACCATGGACTTGGTGCTGGAGATGTGTAACACCAGGTCCATCCACTGGTGCGGTGTATCAGGGCGACAGCTGGGGAAACTCAGTCCCGGTGCCTTCCTCTCTCTGCCCCTCATACTCCTCTCATCCGTCCAGGGTCTGCAGAGTATTTCTGGATTGAGACTCACAGATACCTTTCTGAAGAGGACGTACGAATATGACGACATCGCAcaagtgtgtgttgtctgcccATATACGAACAATGAGTGCTAGACATTTTATTTCGCTTTTTGCATTTTAGATATGAATGGACCAACGGTGGAATTCTGCACTGACATTTCACTCTTTTTGCAACCTGATGGgattatactgtattttaaaataaattgtgaaTAATATGAATCACTTTCTTTGCAAATAATTATGTAAATGTGCataaatgttaataaaaaaacatcggTCATCTTT
>XM_039780715.1
gcTTCCTGTAAGGTCAAAGTTCAACTGCTAGCCTAtcatagctagctagcatagTAGCAACACCACCCCGATAAGATAGTTTACTCTGTCACAATGGAAGTAAATCAAGCGAAACAAGAACACCTACTCGCATTAAAAGTGATGCGGTTAACAAAACCGACACTCTTCACAAACTTGCCAGTGACATGCGAAGATCGAGATCTGCCAGGGGATTTATTTGCTCAGCTTATGAAGGAGGACCCCTCCACCATCAAAGGAGCAGAGGCTTTAATGCTCGGAGAGATGCTTACATTACCGCAAAACTTTGGAAATATTTTCCTTGGCGAGACCTTCTCCAGTTACATCAGTGTGCACAATGACAGCAACCAAGTTGTGAAGGACATTCTTGTGAAgGCTGATCTACAGACCAGCTCACAGAGGCTCAACCTCTCGGCGTCAAACTCCGCAGTAGGCGAACTCAAACCTGAATGCTGCATTGACGATGTTATCCACCACGAAGTCAAAGAAATTGGAACACATATCTTAGTTTGTGCTGTCAGTTACACCACTCAGTACGGGGAGAAGCTCTATTTTCGGAAGTTCTTCAAATTCCAGGTTTTGAAGCCGTTGGATGTGAAGACAAAGTTCTACAATGCAGAGACAGACGAAGTGTTCCTGGAGGCTCAGATCCAGAACATCACCACGTCTGCGATGTTCATGGAGAAGGTCTCTCTCGAGCCCTCCATGATGTACAACGTCACAGAGCTCAACACGGTCGCAAGTGGAGAAgatggAGAGTCCACATTTGGGAAAATGTCCTACCTGCAGCCCATGGACACAAGGCAGTACCTGTACTGCCTGAAGCCAAAGCCAGAGTACGCGGAGAAGGCAGGCGTCATCAAGGGTGTGACGGTGATAGGGAAGCTTGACATCGTATGGAAGACTAATCtcggggagagagggaggctgCAGACCAGTCAGCTGCAAAGAATGGCTCCAGGGTATGGAGACATCAGGTTGTCTTTGGAGATGATTCCTGACACTGTCAACCTTGAAGAACCTTTTGACATTATCTGTAAAATCACCAACTGCAGCGAAAGAACCATGGACTTGGTGCTGGAGATGTGTAACACCAGGTCCATCCACTGGTGCGGTGTATCAGGGCGACAGCTGGGGAAACTCAGTCCCGGTGCCTTCCTCTCTCTGCCCCTCATACTCCTCTCATCCGTCCAGGGTCTGCAGAGTATTTCTGGATTGAGACTCACAGATACCTTTCTGAAGAGGACGTACGAATATGACGACATCGCAcaagtgtgtgttgtctgcccATATACGAACAATGAGTGCTAGACATTTTATTTCGCTTTTTGCATTTTAGATATGAATGGACCAACGGTGGAATTCTGCACTGACATTTCACTCTTTTTGCAACCTGATGGgattatactgtattttaaaataaattgtgaaTAATATGAATCACTTTCTTTGCAAATAATTATGTAAATGTGCataaatgttaataaaaaaacatcggTCATCTTT

Function

symbol description
trappc13 Predicted to be part of TRAPPIII protein complex. Is expressed in notochord. Orthologous to human TRAPPC13 (trafficking protein particle complex subunit 13).

NR:

description
PREDICTED: trafficking protein particle complex subunit 13 isoform X2

GO: NA

KEGG:

id description
K20310 TRAPPC13; trafficking protein particle complex subunit 13

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039780711.1 True 1587 mRNA 0.46 13 26981156 26992779
XM_039780713.1 False 1569 mRNA 0.46 12 26981156 26992779
XM_039780714.1 False 1542 mRNA 0.46 13 26981156 26992779
XM_039780715.1 False 1524 mRNA 0.46 12 26981156 26992779

Neighbor

gene id symbol gene type direction distance location
LOC120545882 NA coding upstream 1973 26977461 ~ 26979183 (+)
LOC120545850 NA coding upstream 5771 26973755 ~ 26975385 (+)
LOC120545041 LOC104936786,LOC103353268,LOC104946837 coding upstream 15033 26940154 ~ 26966123 (+)
zgc:162472 NA coding upstream 394943 26566849 ~ 26586213 (+)
dab2 dab2 coding upstream 416549 26555227 ~ 26564607 (+)
srek1 srek1,LOC106947217,LOC103154506,LOC106917056 coding downstream 83731 27076510 ~ 27091059 (+)
mast4 mast4,LOC103371489 coding downstream 117974 27110753 ~ 27212141 (+)
pik3r1 pik3r1,LOC104930938,LOC103371488,LOC102795099,LOC105915567,LOC102216923 coding downstream 242753 27235532 ~ 27261602 (+)
LOC120545398 homer1,LOC102798051 coding downstream 546661 27539440 ~ 27568109 (+)
dmgdh dmgdh coding downstream 618023 27610802 ~ 27631081 (+)
LOC120546076 NA non-coding upstream 288268 26691381 ~ 26692888 (+)
G177937 NA non-coding upstream 466194 26514526 ~ 26514962 (+)
G177876 NA non-coding upstream 607468 26369841 ~ 26373688 (+)
G177874 NA non-coding upstream 619884 26360394 ~ 26361272 (+)
G177802 nsa2 non-coding upstream 983458 25995444 ~ 25997698 (+)
G178045 NA non-coding downstream 111999 27104778 ~ 27105030 (+)
G178155 NA non-coding downstream 479132 27471911 ~ 27513908 (+)
G178166 tia1,LOC100703764,LOC102796970,LOC103362264,LOC101155125 non-coding downstream 524044 27516823 ~ 27524148 (+)
G178198 NA non-coding downstream 577774 27570553 ~ 27573678 (+)
G178205 LOC103362269,LOC105918759 non-coding downstream 614701 27607480 ~ 27608213 (+)
LOC120545040 LOC103353292 other upstream 50862 26727810 ~ 26930294 (+)
LOC120546038 NA other upstream 366197 26586647 ~ 26614959 (+)
LOC120545651 mol1a,LOC100706667,LOC102220180,LOC105027268,LOC103353284,LOC106562938,LOC103389989 other upstream 569143 26336307 ~ 26412013 (+)
G177848 btf3,LOC104954705,LOC107080991 other upstream 736265 26219481 ~ 26244891 (+)
G177809 hexb,LOC102784651 other upstream 959325 26018164 ~ 26021831 (+)
nln nln other downstream 9680 27002459 ~ 27011449 (+)
erbin erbin other downstream 20110 27012889 ~ 27065706 (+)
lhfpl2a lhfpl2,LOC101175333 other downstream 663757 27656536 ~ 27697932 (+)
LOC120545218 NA other downstream 1574367 28567146 ~ 28572395 (+)
LOC120544907 hnrnpd,LOC104960871 other downstream 1587489 28580268 ~ 28588032 (+)

Expression


Co-expression Network