RNA id: XM_039780713.1


Basic Information

Item Value
RNA id XM_039780713.1
length 1569
RNA type mRNA
GC content 0.46
exon number 12
gene id trappc13
representative False

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 26981156 ~ 26992779 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gcTTCCTGTAAGGTCAAAGTTCAACTGCTAGCCTAtcatagctagctagcatagTAGCAACACCACCCCGATAAGATAGTTTACTCTGTCACAATGGAAGTAAATCAAGCGAAACAAGAACACCTACTCGCATTAAAAGTGATGCGGTTAACAAAACCGACACTCTTCACAAACTTGCCAGTGACATGCGAAGATCGAGATCTGCCAGGGGATTTATTTGCTCAGCTTATGAAGGAGGACCCCTCCACCATCAAAGGAGCAGAGGCTTTAATGCTCGGAGAGATGCTTACATTACCGCAAAACTTTGGAAATATTTTCCTTGGCGAGACCTTCTCCAGTTACATCAGTGTGCACAATGACAGCAACCAAGTTGTGAAGGACATTCTTGTGAAgGCTGATCTACAGACCAGCTCACAGAGGCTCAACCTCTCGGCGTCAAACTCCGCAGTAGGCGAACTCAAACCTGAATGCTGCATTGACGATGTTATCCACCACGAAGTCAAAGAAATTGGAACACATATCTTAGTTTGTGCTGTCAGTTACACCACTCAGTACGGGGAGAAGCTCTATTTTCGGAAGTTCTTCAAATTCCAGTGTGAGAAAACGACCGCATTCAGTTTGCACTCTATTTTCAATCAGGTTTTGAAGCCGTTGGATGTGAAGACAAAGTTCTACAATGCAGAGACAGACGAAGTGTTCCTGGAGGCTCAGATCCAGAACATCACCACGTCTGCGATGTTCATGGAGAAGGTCTCTCTCGAGCCCTCCATGATGTACAACGTCACAGAGCTCAACACGGTCGCAAGTGGAGAAgatggAGAGTCCACATTTGGGAAAATGTCCTACCTGCAGCCCATGGACACAAGGCAGTACCTGTACTGCCTGAAGCCAAAGCCAGAGTACGCGGAGAAGGCAGGCGTCATCAAGGGTGTGACGGTGATAGGGAAGCTTGACATCGTATGGAAGACTAATCtcggggagagagggaggctgCAGACCAGTCAGCTGCAAAGAATGGCTCCAGGGTATGGAGACATCAGGTTGTCTTTGGAGATGATTCCTGACACTGTCAACCTTGAAGAACCTTTTGACATTATCTGTAAAATCACCAACTGCAGCGAAAGAACCATGGACTTGGTGCTGGAGATGTGTAACACCAGGTCCATCCACTGGTGCGGTGTATCAGGGCGACAGCTGGGGAAACTCAGTCCCGGTGCCTTCCTCTCTCTGCCCCTCATACTCCTCTCATCCGTCCAGGGTCTGCAGAGTATTTCTGGATTGAGACTCACAGATACCTTTCTGAAGAGGACGTACGAATATGACGACATCGCAcaagtgtgtgttgtctgcccATATACGAACAATGAGTGCTAGACATTTTATTTCGCTTTTTGCATTTTAGATATGAATGGACCAACGGTGGAATTCTGCACTGACATTTCACTCTTTTTGCAACCTGATGGgattatactgtattttaaaataaattgtgaaTAATATGAATCACTTTCTTTGCAAATAATTATGTAAATGTGCataaatgttaataaaaaaacatcggTCATCTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU240899 lncRNA upstream 234896 26727838 ~ 26746260 (+) False LOC120545040
XR_005636783.1 lncRNA upstream 288268 26691381 ~ 26692888 (+) True LOC120546076
TU240870 lncRNA upstream 466194 26514526 ~ 26514962 (+) True G177937
TU240792 lncRNA upstream 607468 26369841 ~ 26373688 (+) True G177876
TU240790 lncRNA upstream 619884 26360394 ~ 26361272 (+) True G177874
TU241014 lncRNA downstream 72498 27065277 ~ 27065705 (+) False erbin
TU241021 lncRNA downstream 111999 27104778 ~ 27105030 (+) True G178045
TU241182 lncRNA downstream 479132 27471911 ~ 27513908 (+) True G178155
TU241195 lncRNA downstream 524044 27516823 ~ 27521956 (+) True G178166
TU241193 lncRNA downstream 524697 27517476 ~ 27524148 (+) False G178166
XM_039780512.1 mRNA upstream 1973 26977461 ~ 26979183 (+) True LOC120545882
XM_039780471.1 mRNA upstream 5771 26973755 ~ 26975385 (+) True LOC120545850
XM_039778982.1 mRNA upstream 15033 26940154 ~ 26966123 (+) True LOC120545041
XM_039778981.1 mRNA upstream 50862 26727810 ~ 26930294 (+) True LOC120545040
XM_039780785.1 mRNA upstream 366197 26586647 ~ 26614959 (+) False LOC120546038
XM_039780573.1 mRNA downstream 9680 27002459 ~ 27011449 (+) True nln
XM_039779811.1 mRNA downstream 20110 27012889 ~ 27065706 (+) False erbin
XM_039779810.1 mRNA downstream 20112 27012891 ~ 27065706 (+) True erbin
XM_039779812.1 mRNA downstream 47828 27040607 ~ 27062828 (+) False erbin
XM_039780555.1 mRNA downstream 83731 27076510 ~ 27091059 (+) False srek1
XR_005636776.1 other upstream 366197 26586647 ~ 26614959 (+) True LOC120546038
XR_005636774.1 other upstream 366197 26586647 ~ 26614959 (+) False LOC120546038
XR_005636775.1 other upstream 366197 26586647 ~ 26614959 (+) False LOC120546038
XR_005636777.1 other upstream 366197 26589511 ~ 26614959 (+) False LOC120546038
TU240757 other upstream 757558 26223115 ~ 26223598 (+) True G177848
TU241015 other downstream 17418 27010197 ~ 27011395 (+) False nln
XR_005636773.1 other downstream 663757 27656536 ~ 27697932 (+) False lhfpl2a
XR_005636601.1 other downstream 1587489 28580268 ~ 28588026 (+) False LOC120544907
TU241633 other downstream 1951728 28944507 ~ 28945444 (+) True G178506
TU241682 other downstream 2092170 29084949 ~ 29092326 (+) True G178529

Expression Profile