RNA id: TU241195


Basic Information

Item Value
RNA id TU241195
length 1778
lncRNA type inter_gene
GC content 0.42
exon number 4
gene id G178166
representative True

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 27516823 ~ 27524148 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

caacaacaacaacaacaacaacaacaacattataCGTACGATATTTTCCCAAATGGAGCAAAAGCTGCTTTTATGTCATCTGTGGTGATTTCAGGACTAAGATCTCCAACAAAGACGTGGAAGTGacTGCTCGTGTCTTTCTTTTGGCTGGTTGGCGTGGTGGCCCAGTTGACCTTGACCTCCTTACCCAGTATTTTCCGACCATTCATGGCTGCGATTGTGGCAGTGGCATGTCTATGCTCATAGAACTCCACAAAGCAGTACGGATCATGACCTGCTGTATCTACTATCATTTTACAGCTCTTGCAGGGTCCAATCTGCCCAAACAACTCTAAGATGAGGGCCTCTGTCACGTCCCGGGACAGATTCCCCACATACCTACAATGGACAGAAGACACAGATAGTACAGTATTACAGTTTTGTGATGTAAATGTTGATTTAACATGTTGTGTGGGTACTGAAGCAGAGGCAAGCTTTTCATCCaacttgtattattattactataccTGGACACACAGGCTTGGAAAGGTGAGAGAGAACAGCTCACCTCATTCTTCTACATTGTTTTGTTTATCTATTTACCTGTTTGCCTCAAAACTAAAAATGGCCTTAGCTGCCTCATTACAATGGTGTTGTAAATTATTCCCCTCCCTTTTCCTGTAGTTTATTTGGGTTGTAACTAGTCTGGATAaatgaagtacatttccaggttaaagcctgacatccggcgcGTGGCGTGGCCCcattcccgagactattttgcacaacttatggtgcgttctttttgtccaccgaagtcgttttacgagttgttttccggagttacgacccgaagttgcaaaaaaaaaacgcccccgaggtcgtatttacgactcgtcaagtcgtctgaactcagaggaccccgagctcactttcaaagatggctacatcgtgcatcacacgtagtaaacattgtggttttctacaattttaagcacttttgcctttgttgtaaccaaatgaagaagtcgtacacatagcgctgtatactgctacctataggcatgtctctacagtcttattaggagttaaacatagcactgtatactgctacctataggcatgtctctacagtcttattaggagttaaacatagcgctgtatactgctacctataggcatgtccctacagtcttattaggagttaaacatagcgctgtatactgctacctataggcatgtctctacagtcttattaggagttaaacatagcgctgtatactgctacctataggcatgtctctacagtcttatgagttaaacatagcgctgtatactgctacctataggcatgtctctacagtcttattaggagttaaacatagcgctgtatactgctacctataggcatgtctctacagtcttattaggagttatacatagcgctgtatactgctacctataggcatgtctctacagtcttattaggagttaaacatagcgctgtatactgctacctataggcatgtctctacagtcttattaggagttaaacatagcgctgtatactgctacctataggcatgtctctacagtcttattaggagttaaataccgcctgattagttattttgtagcttgtgcagctgaaattggctagagacgctcggttgctatatgacaacaacggctttaagccgagtcttgagcagaaagcagagcagtagcctaacgttaacgttaatcaaaacgtaattttcatgtatcaaactgtgaaatatatgtgtgcaatatgtcaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU241182 lncRNA upstream 2915 27471911 ~ 27513908 (+) True G178155
TU241021 lncRNA upstream 411793 27104778 ~ 27105030 (+) True G178045
TU241014 lncRNA upstream 451118 27065277 ~ 27065705 (+) False erbin
TU240899 lncRNA upstream 770563 26727838 ~ 26746260 (+) False LOC120545040
XR_005636783.1 lncRNA upstream 823935 26691381 ~ 26692888 (+) True LOC120546076
TU241237 lncRNA downstream 48597 27570553 ~ 27573678 (+) True G178198
TU241244 lncRNA downstream 85524 27607480 ~ 27608213 (+) True G178205
TU241251 lncRNA downstream 180903 27702859 ~ 27706063 (+) True G178210
TU241305 lncRNA downstream 291527 27813483 ~ 27813878 (+) True G178256
TU241315 lncRNA downstream 410862 27932818 ~ 27933019 (+) True G178266
XM_039779442.1 mRNA upstream 255221 27235532 ~ 27261602 (+) True pik3r1
XM_039779443.1 mRNA upstream 255223 27255651 ~ 27261600 (+) False pik3r1
XM_039779444.1 mRNA upstream 255223 27256994 ~ 27261600 (+) False pik3r1
XM_039780552.1 mRNA upstream 310659 27170672 ~ 27206164 (+) False mast4
XM_039780550.1 mRNA upstream 313777 27163686 ~ 27203046 (+) False mast4
XM_039779681.1 mRNA downstream 17484 27539440 ~ 27568109 (+) True LOC120545398
XM_039779682.1 mRNA downstream 17484 27539440 ~ 27568109 (+) False LOC120545398
XM_039779683.1 mRNA downstream 17485 27539441 ~ 27568109 (+) False LOC120545398
XM_039779685.1 mRNA downstream 17485 27539441 ~ 27562161 (+) False LOC120545398
XM_039779684.1 mRNA downstream 17487 27539443 ~ 27568109 (+) False LOC120545398
TU241015 other upstream 505428 27010197 ~ 27011395 (+) False nln
XR_005636776.1 other upstream 901864 26586647 ~ 26614959 (+) True LOC120546038
XR_005636773.1 other downstream 134580 27656536 ~ 27697932 (+) False lhfpl2a
XR_005636601.1 other downstream 1058312 28580268 ~ 28588026 (+) False LOC120544907
TU241633 other downstream 1422551 28944507 ~ 28945444 (+) True G178506
TU241682 other downstream 1562993 29084949 ~ 29092326 (+) True G178529
TU242100 other downstream 2220667 29742623 ~ 29744075 (+) True G178845

Expression Profile