G178205 (LOC103362269,LOC105918759)


Basic Information

Item Value
gene id G178205
gene name LOC103362269,LOC105918759
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 27607480 ~ 27608213 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU241244
AGTGAAGCGCTGAGTGTGGCCTCTGTTCTCCAGTTTATCATCGCTTGCGTAGAAAGTGAATGTCTGCATGACATTGGAGCCTGCTCTCAGGAACTCCCGGTGCAGCTGGCGCACTGCTTCAGGGTGCTCGGCTGCAGCCTCGGGGGTCCACGGTCCTGCTTTGACATAACCCCTCTTCTCCAGGGCGAAGACAAAGCCTCCGTCCCCGATGACGATCTCTCCTGCATCCAGACGCTCCAATATGCCCTTCTTTGCTCCTGATGCCATGATTATTGCAGCAGTGACCGGCCCACTCTTGAGTGTCTG

Function

NR:

description
PREDICTED: betaine--homocysteine S-methyltransferase 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU241244 True 306 lncRNA 0.57 3 27607480 27608213

Neighbor

gene id symbol gene type direction distance location
LOC120545398 homer1,LOC102798051 coding upstream 39371 27539440 ~ 27568109 (+)
pik3r1 pik3r1,LOC104930938,LOC103371488,LOC102795099,LOC105915567,LOC102216923 coding upstream 345878 27235532 ~ 27261602 (+)
mast4 mast4,LOC103371489 coding upstream 395339 27110753 ~ 27212141 (+)
srek1 srek1,LOC106947217,LOC103154506,LOC106917056 coding upstream 516421 27076510 ~ 27091059 (+)
trappc13 trappc13 coding upstream 614701 26981156 ~ 26992779 (+)
dmgdh dmgdh coding downstream 2589 27610802 ~ 27631081 (+)
arsb arsb,LOC102799236 coding downstream 25524 27633737 ~ 27652089 (+)
ap3b1a ap3b1,LOC104966876 coding downstream 111984 27720197 ~ 27784006 (+)
tbca tbca coding downstream 221166 27829379 ~ 27844258 (+)
otpa otp,LOC107093773,LOC102789457 coding downstream 241452 27849665 ~ 27854808 (+)
G178198 NA non-coding upstream 33802 27570553 ~ 27573678 (+)
G178166 tia1,LOC100703764,LOC102796970,LOC103362264,LOC101155125 non-coding upstream 83332 27516823 ~ 27524148 (+)
G178155 NA non-coding upstream 93572 27471911 ~ 27513908 (+)
G178045 NA non-coding upstream 502450 27104778 ~ 27105030 (+)
LOC120546076 NA non-coding upstream 914592 26691381 ~ 26692888 (+)
G178210 NA non-coding downstream 94646 27702859 ~ 27706063 (+)
G178256 NA non-coding downstream 205270 27813483 ~ 27813878 (+)
G178266 NA non-coding downstream 324605 27932818 ~ 27933019 (+)
G178267 NA non-coding downstream 330691 27938904 ~ 27939748 (+)
G178348 NA non-coding downstream 602946 28211159 ~ 28211592 (+)
erbin erbin other upstream 541774 27012889 ~ 27065706 (+)
nln nln other upstream 596031 27002459 ~ 27011449 (+)
LOC120545040 LOC103353292 other upstream 677186 26727810 ~ 26930294 (+)
LOC120546038 NA other upstream 992521 26586647 ~ 26614959 (+)
LOC120545651 mol1a,LOC100706667,LOC102220180,LOC105027268,LOC103353284,LOC106562938,LOC103389989 other upstream 1195467 26336307 ~ 26412013 (+)
lhfpl2a lhfpl2,LOC101175333 other downstream 48323 27656536 ~ 27697932 (+)
LOC120545218 NA other downstream 958933 28567146 ~ 28572395 (+)
LOC120544907 hnrnpd,LOC104960871 other downstream 972055 28580268 ~ 28588032 (+)
G178506 NA other downstream 1336294 28944507 ~ 28945444 (+)
ptpn11a ptpn11 other downstream 1398408 29006621 ~ 29083011 (+)

Expression


Co-expression Network