G178198


Basic Information

Item Value
gene id G178198
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 27570553 ~ 27573678 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU241237
ccctcaataaaacttgaaaataaacgttaacatatataacagctgttacgtcagttctactttactacttgtgctcatttaaaatacaatcactcaatatttgtctttattattattactgtaaagtcttaatttagctgtagcctgcttttcccattaagtttgacttaacgttattttagactgaatctagcggTCAGCTAgtggttagccgaattagctgttagctaaactaacgttagcttcccggtggaggctagccataggctagcgtggaacagattgtgCAGGTCGtaaacagtattatcttgcgcatgtgcagaacggatcgtgcaggcagaatgGATCGTGTACAGACAGTACCCATAGATGGTTAGCTGATGGTTAGCCTGCTAGCTGCCGCCATACCAAATCCTAATGTGTTCATTACTGCCTCCTGTGGCCAGATGGCGGGAAACACCCACTGGTAACTTATGGTTGGTGAGAACTGCAGTTGTCGCATGGATGTATAATATtcaatagggctgcacaattaatctcAATTtcatcgaaatcgcaatatggactagtgcaatatccaaatatgcaatttttgcaatatttgttaaaggcaaaatatgtgtcaaacatttctgaattaagtattgtgaggctgcagagacgtcccggcctagaAATTGTATcttacagactaaagaaaaaaaatcttttggttctgatcctcgcaaaaaaatcaccaaaacaatcattccctccaatatcgtgcatcatattgcaatatcagtcaaaataatcgcaattaggcATTTTCCTCACATCTAATTCTAATTCAATAGCCATAAGAAGCAACAATGAGCACACGTTATTTCCCAcacatttgaaaaaagaaacttttACAGGCGACACAAAggtcagatttatttatcaacgctggtaggtggattttttaaatctttggacagagctaggctagctgttttgactctttatgctaagctaagctaatcgtcTGTAGCTTCCCAATTACTGCACAGACAAAAGTGGTATCTAATCTTCTCATCGAACTCTTGGTAAGAAATCTAATTAATGAATTAACCCCCCAAAAGTCTAACTATTCGTTTTAAATGTAGCCATGGCACTCAGTGCATGACTGCTTAAATACAGGAAAGTgtgtttcagttaaaaacaggTTTGACACACAAAGTAAGAAGAgaggtattaaaaaaaagaaaaaaaagaaaatcacacacgcacgcacaaaccaCTCCAGTAAGTGATAAGCTCGGAAAACAAATGTCTGAAGGCAGTGGAAAAAGAGAGACTCTCTCAGGTTAATAAAATgacagtaaaaataaatatgaacatGTGATCTGAATGTTGGTCAGGTCTGGAGAAACAGGGGGCTGCGTCTGTTACCAGCAGATGGCGATGAAGCCTCAGACTTCAGCTAACTAACTTCCATATGCTGCATGGAAAGGTTTCTGCATTATGTATCCAAACTACATAACCTCCACATGTGCAGTTAGTTATACGCGTGTGTTTAAATAGGGGGGAGTCCTCTTAAACATTTCCTCAGTATTATTTTAAAGACCCCATGAAACATCAATTAATCTGTAGGTTATTTTCTCAAGTAATCCATTAATCGTTTAGTCTACAAAATAGTGAAAGATGTTGAAGGGGATCATGTtatgtccaaccaacagtccaaaagatattaagagaaaagcagcaaattgtcACATTGGAGAATCTAAAACCAGAGAATGAGGACTTTAAAGAACGGATGGCTTAAATAATGTCAGATTAAATTCTCTGCTGAATCGTTCCAGCTCCAGTTCAAGTAGAGATCCATAAAATAGATTTTCATCATCTGTCTGAAACAcagccagctttttttttttcagtttccttttttgGTCATATGCTTTTGGGTCTTGAAGAGTAACTTAACGGTAATGAATCATCACAGGATGATCACAACGGAGGTCATTATTATTCATAACAGGGAATCCCTctttatatattaaaatattacatccatCCATTTCTCCATCTCAATCAGCCGATCACGGAAAACGACTAAAGCTAGATTCAAGTAATGGTTTAGATTtcaattggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatattttgtaatatatattatacaatACATTTAGCCAAAATACTGTCCTGGTTAAAATGGCATCCTTGGAGGAGGAAAAGCAGAGGATGCACAAGTCAACAGATGTTTCTTATGAATATTTATCTGAAAAACTACAGCGGTGTGTGCTAATATTTCCAGTGTTGGCATTTCCAAGTTTACTTTGCATTTCGGACCCAGCTGTGCCGAGCTTCTTACAGTCCGAGCCTGTGTGGGCTGCAGGTAAACGCTTTGTTTGCAAAACATACTAACATGAACTCTCTCGCTCCCAGCTACAGCATGTTGAACTTTCAAAGTTCAAGACTCTCGAAGTCTGGCATGAATACAGGAAATAAAGGATTAGGTCGCGCTCATTATTAGAATCATGTTCTAGATTGTGCAAttacatttcccatgatgctttgtgTGATGTACACAGGAAGTGTAATGTCATTAGAGCAAGTTTTGGCAAATTGGCACCATTGAAAAAAGTATGCCGAATTAGCGGTTAGCAGTTCCTGTTTGCAGTGTACCCATGGATGTACACACAACTATCACTGGATTACTTTCATACTGAAGAAAACTTAAAACATGATTATTATCAGGCTAGTTCTGCAGTTTTCTATGATTTCTAAGTCCGAGATGGACATCGGCGATACAGACATCCTCTGGAAGTTTAAGTCACACCGAGTCTAAACATATTGTACGTTGAAGCAAATTTCGGCAATCTGGCGCCAATTACCTCcatgagctgctgctgctgctgctgctcatgTTAAACTACAAGAATTAAAACTTCATGTTGTTTTTAGAACAGATTATGGAGATTGAATTTGAGTTATATATCCTTCCCCCAAAATCTTCTCCTCTTGTTATATTATACTTTACTCAGTATGCTGCATCTATTAATTATTTCTAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU241237 True 3098 lncRNA 0.38 2 27570553 27573678

Neighbor

gene id symbol gene type direction distance location
LOC120545398 homer1,LOC102798051 coding upstream 2444 27539440 ~ 27568109 (+)
pik3r1 pik3r1,LOC104930938,LOC103371488,LOC102795099,LOC105915567,LOC102216923 coding upstream 308951 27235532 ~ 27261602 (+)
mast4 mast4,LOC103371489 coding upstream 358412 27110753 ~ 27212141 (+)
srek1 srek1,LOC106947217,LOC103154506,LOC106917056 coding upstream 479494 27076510 ~ 27091059 (+)
trappc13 trappc13 coding upstream 577774 26981156 ~ 26992779 (+)
dmgdh dmgdh coding downstream 37124 27610802 ~ 27631081 (+)
arsb arsb,LOC102799236 coding downstream 60059 27633737 ~ 27652089 (+)
ap3b1a ap3b1,LOC104966876 coding downstream 146519 27720197 ~ 27784006 (+)
tbca tbca coding downstream 255701 27829379 ~ 27844258 (+)
otpa otp,LOC107093773,LOC102789457 coding downstream 275987 27849665 ~ 27854808 (+)
G178166 tia1,LOC100703764,LOC102796970,LOC103362264,LOC101155125 non-coding upstream 46405 27516823 ~ 27524148 (+)
G178155 NA non-coding upstream 56645 27471911 ~ 27513908 (+)
G178045 NA non-coding upstream 465523 27104778 ~ 27105030 (+)
LOC120546076 NA non-coding upstream 877665 26691381 ~ 26692888 (+)
G177937 NA non-coding upstream 1055591 26514526 ~ 26514962 (+)
G178205 LOC103362269,LOC105918759 non-coding downstream 33802 27607480 ~ 27608213 (+)
G178210 NA non-coding downstream 129181 27702859 ~ 27706063 (+)
G178256 NA non-coding downstream 239805 27813483 ~ 27813878 (+)
G178266 NA non-coding downstream 359140 27932818 ~ 27933019 (+)
G178267 NA non-coding downstream 365226 27938904 ~ 27939748 (+)
erbin erbin other upstream 504847 27012889 ~ 27065706 (+)
nln nln other upstream 559104 27002459 ~ 27011449 (+)
LOC120545040 LOC103353292 other upstream 640259 26727810 ~ 26930294 (+)
LOC120546038 NA other upstream 955594 26586647 ~ 26614959 (+)
LOC120545651 mol1a,LOC100706667,LOC102220180,LOC105027268,LOC103353284,LOC106562938,LOC103389989 other upstream 1158540 26336307 ~ 26412013 (+)
lhfpl2a lhfpl2,LOC101175333 other downstream 82858 27656536 ~ 27697932 (+)
LOC120545218 NA other downstream 993468 28567146 ~ 28572395 (+)
LOC120544907 hnrnpd,LOC104960871 other downstream 1006590 28580268 ~ 28588032 (+)
G178506 NA other downstream 1370829 28944507 ~ 28945444 (+)
ptpn11a ptpn11 other downstream 1432943 29006621 ~ 29083011 (+)

Expression


Co-expression Network