ap3b1a (ap3b1,LOC104966876)


Basic Information

Item Value
gene id ap3b1a
gene name ap3b1,LOC104966876
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 27720197 ~ 27784006 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039779590.1
CAGAGTAGCATGCAAAGCCAGGAGGCAGGTAAGATAGCCTAGTTCCCAGAGGAAAATTTACATGTATAAGAGAGAGTAAGAAATTAACAAGCGACCACAGCTGACCAGCAGTTGGTGTCCGAAGGAACGTGGGCTACAGCAGACTGTGGACAGTGGACTACAAGGAGAGCGGTCCCACCCGAGTGAGCAGGCACTACCCTTAAGCATGAGTATGACTTGCCATAAGCAGAGCTGATGAGGCATCTTGTGACTTTTTTGCCCAAGAGAAGAGGAAGGGAGTAGTGAATGACCGGCACAAAGCCAGTGAAGCCTGTGCTTTTTTCCACTCTCCACAGCTTTGACAGTTATGAACAAGAACGAGTTAAGAAGACATCTGTAAATAGAGCCAAGAGAACAGGGCACACAGCCTGAAGGAAAGTAATTACCACAGCTCAGTTTCACTCTTGAGTTACTTAAAATACAGTCAGCTGGGTTTGTGGACTTTGTTCCTTAgacggcgcacacacacacacacacacacgcacagaacgAGCACTGgttgttgaagtgttttttggACTGCTGTGGAGGAAAGCCGGTATGGATGTTGGTTTCTCATCTTTGCGCTCTGAGGCAGTGGGAGCCATGAGGATGGCGCTGGTGTCTGCGGAGAACTTACAGCTCACTCTGAAGTCTGAGCTCAGTCAGGAAGAACGGGCCCTGACACACACCAAGAGTAACCCCAAGGAGACACACAAAGCCGGGAATGAAGACCTTAAAGAGATGTTGGAGAGCAACAAGGATTCGCTCAAACTGGAAGCCATGAAAAGGGTTGTTGGGctgATTGCCAAAGGGAAAAATGCATCTGAGCTGTTTCCTGCTGTCGTGAAGAACGTTGCGAGTAAGAACATCGAGCTTAAGAAGCTTGTATATGTGTACCTGGTGAGGTATGCAGAAGAGCAGCAGGACCTGGCTTTGCTATCCATCAGCACCTTCCAGCGGGCCCTCAAGGACCCAAACCAGTTTATCCGGGGCAGCGCACTGAGGGTTTTGTCTAGTATCCGCGTCCCCATAATTGTCCCCATCATGATGCTGGCCATCAAGGAGGCTGCAGCTGACCTGTCCCCATATGTCAGGAAGACATCGGCCCATGCTATCCAGAAGCTCTACAGCATGGATCCAGACCAGAAAGAGCAGCTGATCGAAGTGATAGAGAAACTATTGAAAGACAAAAGCACACTGGTGGCCGGCAGTGTGGTGATGGCTTTTGAGGAAGTGTGTCCAGATCGCATTGACTTGATCCATAAGAACTACAGAAAGCTGTGTAACCTGTTGGTGGATGTGGAGGAGTGGGGCCAGGTGGTCATCATCTCCATGCTGACGCGCTACGCCAGGACGCAGTTCACCAGTCCCTGGAAGGAGGGTGCCATGTTCGATGAGAACAATGAGAAGGCGTTCTATGACTCTGACTCGGAGGAGAAAAAAGACCAGAAGGAGGCCCAACCTTACATCATGGATCCCGATCACAGGCTGCTGCTCAGGAACACCAAACCTCTACTGCAGAGCAGGAACACTGCTGTGGTGATGTCTGTCGCTCAACTCTATTGGCATTTGGCCCCTAAGCATGAAGTCAACATTGTCACCAAATCACTGGTTCGACTACTAAGAAGCCACAGAGAGGTGCAGTACATTGTGCTTCAGAATATTGCCACGATGTCCATTCAGAGGAAGGGGATGTTTGAGCCCTTCATGAAGAGTTTCTATGTGAGATCTACAGATGCCACACACATCAAAACACTGAAGTTGGAGATCCTGACCAACCTGGCCAATGAAGCCAACATCTCCACTATTCTGAGGGAATTTcagacctatgtgaagagccaggacaaGGCGTTTGCAGCAGCCACCATTCAGGCCATCGGCAGATGTGCCACCAACATCACCGAGGTGACAGACACTTGTCTCAACGGTCTGGTGCTGCTGCTTTCCAACAGAGACGAGACTGTAGTGGCCGAGAGCGTGGTGGTGATCAAGAAGTTGCTTCAGACTCAGCCCACCCAGCACAGTGAGATCATCAAACACATGGCCAAGCTCTTCGACAACATCACTGTCTCCATGGCCCGAGCTAGCATCCTGTGGCTGATGGGAGAGTACTGTGAGAGGGTGCCAAAAATTGCCCCTGATGTACTCCGTAAGATGGCAAAGACTTTCACAGCAGAGGAGGACATTGTCAAGTTGCAGACAGTCAACCTAGCAGCCAAACTCTACCTGACCAACTCCAAGCAGACTAAGCTGCTGACCCAGTACATCCTGAACCTCGGCAAATACGACCAGAGCTACGATATCAGAGACCGAACACGCTTCATAAGACAGCTGATAGTGCCCAACGAGAAGAGCGGCGCCCTCAACAAGTACGCTCGACGCATCCTACTGGCCCCCAAACCAGCCCCAGTGCTCGAGTCCGCCTTCAAAGATCGCGACCGTTACCAACTGGGCACTCTCTCCCACAGCCTCAATACTAAAGCTGCTGGATACCTGGAGCTCTCCGACTGGCCAGCTGTTGCTCCTGACCAGTCTGTGAGGAACGTGGAGGTCATTGAGCCAGTGCAAGAGTGGGCGCCGTTAGTTGGGAAGACCAAGAAACCCAAGTCTGACAAGTTCTACTCGGACGAcgaagaggagaaagaagaggaaagatCTGAGAGCAGCGGCAGCgaagacagcagcagcagcagcagcagtagtagtgaagAGTCAGGCAGTGAGAGTGAGGAGGAAAGCAGTGAAGAGTCAGACAAGACCTCCAGTGATTCTGGAAAAAGTTCCAGTGGATCTGAAAAGAGCTCCAGTGAATCTGAATcggaacaaaaaaagaagaaaaagatgacGAAGGCACCGCAGAAGAAAAGCAAACCAACTGCTGCTTTCAGtgacTCGGATGAAAACGGAAATGGACCTGTAGCCCAAGCTAGCAGCTCGTCAGCCGAAAGCTCATCCGACTCAGAGACAGACTCCGAGGACGATTCAGACTCCGACCCCCCCCTAAcacaacagaagaagaagaagaagagcgaGGAAAAGTCCAAACCCAAGgtgGAAGTGAAGTCCAAGGTGGAAGTATCCTTACTGGATCTAGATGACTTTTCTCCTGCACCCACAAATGCACCAAAGTCTTTGGTCGTCTCTTCGAGTATGCTGTCCGACCTCGAGGGCCTTTCTCTCTCCAACATCTCCTCCACCATGCAGGTCACCAGTCCATCTTTCGGCCCTGTGAAAACCTACGAGCTGCTTCACCACATGACAGGAAAAGGTCTGTCGGCCAAGTACCATTTCTCCAGGCAGCCCTGTTTGTACCAGCCCAGTATGGTGGCCGTACAGGTCATACTGACCAACAGCTCAGACCACAGTCTGGAGGAGATCCATATAGGAGACCGAAGTCCAGCGAGCCTGAACATCCACTGCTTTAACACCATCGAGCGGCTGGAGCCAGAGGCCTCGGTGACGGTTTCCATGGGTATTGACTTCAGCGACTCGACACAAGCAGCCAACTTCCAGTTGTGCACCAAGGAGGACCAGTTCAGTGTGTCCATCCAGCCTGCTGTGGGAGAGCTATTAATGCCCAGTACCATGACAGAACAGGACTTCAGCAAGGAGCAAGGTAAGCTCCTGGGCATGAATGAGACATCGGCAaccatcaccatggcaacagcaaACCCCTCCAGCCAGGCCATCAGCATGCAGGTCCTGTGCGCAGCCAACGTAGGAGTGGTCTCATCCAGCGGAAACAACTTCCACAGGTTTGCCGGGCGGACAGTCAGCAGCGGGGCCCTGGTCTTGGTGTCGCTGGAGCTGAAGGAGTCCTCCACTGCCCTGCTTACTATCAGCACAGAGAAGAGCGTCATGGCGTCCATGTTGCTCCGAGACCTCAAACAAACCCTTGCTCAGGTGTAGagtccccccctcctccctactCCCTTTAGTAAAGGTAAAGGGGAACAGCACTTCATTAAAGatttcatgtattttatttctgtggttTGGGACAATTCGAGCAGTACTTTCAAACACATCGCACTTTGATCCTGAATACAGAAACCGAAGAAGTAGAgcttgaacttttttttttttttttttgaaaggatTGTCCTGAATCGCAAGAATAACTTTGTGAAGGTTTTGAATAAAGTGATGATCCTCTTTTTAAAACACACAGAAGGCATCATAGACGTGATGGTGAGCTTTTTAGCCTTACCTTGTCCATTATGAGTCACTCCTCAACATGACACTACTCCATCCAGTCATGTCAAACCAACTGGTCATTGACCTCGGTGGTGACTGTTTAAATTGCATGCAATTTATGGATTTGATCAAGTATTATTATGTACAAACAGCTGAACATTCATTTTGAGGGAACAAGTATAATGCTGCCTCCCTCACAGTGCGACAGGCCAATTTGTCTGTTTAATGTTTACACTGATTGAGATACTCCACTAAAGCATTGATCTCTGAGCCAAGCGACCCTGTGTTTGCATTGATTGGAATTTGTTCTTTAGTgccaagaaaaagagaaaaggaggatTCCTCCAGGCCATTTGGACCCATCTAAACCCTCTCATTACAGTATAAACCTTTGCAAGCTGCTGCAACTACAAACTAGCCTCTGTCCCCGATGTAGTGTTACATTCCAGTCTTTACACTGCCCCCAAATCACATTTGTGCCTTCTACGtgaaaataatgtaatttagaAAACCAAACGTATATGTTAGACTTAAATCAACAAGGTCTTTTTACTTGTATGGCTTTTGCTGAACAATAAAAAGtgaatttattaaaacaaa
>XM_039779591.1
GCTCACACTTCCGCTActgcgtgtaaaaaaaaaagttgggtgAAATCTCGGGGAAGTTTGTCTTTGCAGGAACTTTATACGCTACGTTACACTAATTACACTAACATTTCCTTACTTTTATGAGCAGCTTAAAAGCCGGAAGAGGAGCAGAATATACATTTACTTCTCGTGGCACTCGTTTAAACGTTGAGCATGTCGACGACCGTCTCGTACAATGACCAAGGAGGAGCGGAGGCTGCAGTGGAAGCGGGGCTGGAGAGCACCCCGACCACCTCCAGCACCGCCGGGGCTGCCTTTGGACTTTTCAGCGCTGACTTTAAAAAGAATGAAGACCTTAAAGAGATGTTGGAGAGCAACAAGGATTCGCTCAAACTGGAAGCCATGAAAAGGGTTGTTGGGctgATTGCCAAAGGGAAAAATGCATCTGAGCTGTTTCCTGCTGTCGTGAAGAACGTTGCGAGTAAGAACATCGAGCTTAAGAAGCTTGTATATGTGTACCTGGTGAGGTATGCAGAAGAGCAGCAGGACCTGGCTTTGCTATCCATCAGCACCTTCCAGCGGGCCCTCAAGGACCCAAACCAGTTTATCCGGGGCAGCGCACTGAGGGTTTTGTCTAGTATCCGCGTCCCCATAATTGTCCCCATCATGATGCTGGCCATCAAGGAGGCTGCAGCTGACCTGTCCCCATATGTCAGGAAGACATCGGCCCATGCTATCCAGAAGCTCTACAGCATGGATCCAGACCAGAAAGAGCAGCTGATCGAAGTGATAGAGAAACTATTGAAAGACAAAAGCACACTGGTGGCCGGCAGTGTGGTGATGGCTTTTGAGGAAGTGTGTCCAGATCGCATTGACTTGATCCATAAGAACTACAGAAAGCTGTGTAACCTGTTGGTGGATGTGGAGGAGTGGGGCCAGGTGGTCATCATCTCCATGCTGACGCGCTACGCCAGGACGCAGTTCACCAGTCCCTGGAAGGAGGGTGCCATGTTCGATGAGAACAATGAGAAGGCGTTCTATGACTCTGACTCGGAGGAGAAAAAAGACCAGAAGGAGGCCCAACCTTACATCATGGATCCCGATCACAGGCTGCTGCTCAGGAACACCAAACCTCTACTGCAGAGCAGGAACACTGCTGTGGTGATGTCTGTCGCTCAACTCTATTGGCATTTGGCCCCTAAGCATGAAGTCAACATTGTCACCAAATCACTGGTTCGACTACTAAGAAGCCACAGAGAGGTGCAGTACATTGTGCTTCAGAATATTGCCACGATGTCCATTCAGAGGAAGGGGATGTTTGAGCCCTTCATGAAGAGTTTCTATGTGAGATCTACAGATGCCACACACATCAAAACACTGAAGTTGGAGATCCTGACCAACCTGGCCAATGAAGCCAACATCTCCACTATTCTGAGGGAATTTcagacctatgtgaagagccaggacaaGGCGTTTGCAGCAGCCACCATTCAGGCCATCGGCAGATGTGCCACCAACATCACCGAGGTGACAGACACTTGTCTCAACGGTCTGGTGCTGCTGCTTTCCAACAGAGACGAGACTGTAGTGGCCGAGAGCGTGGTGGTGATCAAGAAGTTGCTTCAGACTCAGCCCACCCAGCACAGTGAGATCATCAAACACATGGCCAAGCTCTTCGACAACATCACTGTCTCCATGGCCCGAGCTAGCATCCTGTGGCTGATGGGAGAGTACTGTGAGAGGGTGCCAAAAATTGCCCCTGATGTACTCCGTAAGATGGCAAAGACTTTCACAGCAGAGGAGGACATTGTCAAGTTGCAGACAGTCAACCTAGCAGCCAAACTCTACCTGACCAACTCCAAGCAGACTAAGCTGCTGACCCAGTACATCCTGAACCTCGGCAAATACGACCAGAGCTACGATATCAGAGACCGAACACGCTTCATAAGACAGCTGATAGTGCCCAACGAGAAGAGCGGCGCCCTCAACAAGTACGCTCGACGCATCCTACTGGCCCCCAAACCAGCCCCAGTGCTCGAGTCCGCCTTCAAAGATCGCGACCGTTACCAACTGGGCACTCTCTCCCACAGCCTCAATACTAAAGCTGCTGGATACCTGGAGCTCTCCGACTGGCCAGCTGTTGCTCCTGACCAGTCTGTGAGGAACGTGGAGGTCATTGAGCCAGTGCAAGAGTGGGCGCCGTTAGTTGGGAAGACCAAGAAACCCAAGTCTGACAAGTTCTACTCGGACGAcgaagaggagaaagaagaggaaagatCTGAGAGCAGCGGCAGCgaagacagcagcagcagcagcagcagtagtagtgaagAGTCAGGCAGTGAGAGTGAGGAGGAAAGCAGTGAAGAGTCAGACAAGACCTCCAGTGATTCTGGAAAAAGTTCCAGTGGATCTGAAAAGAGCTCCAGTGAATCTGAATcggaacaaaaaaagaagaaaaagatgacGAAGGCACCGCAGAAGAAAAGCAAACCAACTGCTGCTTTCAGtgacTCGGATGAAAACGGAAATGGACCTGTAGCCCAAGCTAGCAGCTCGTCAGCCGAAAGCTCATCCGACTCAGAGACAGACTCCGAGGACGATTCAGACTCCGACCCCCCCCTAAcacaacagaagaagaagaagaagagcgaGGAAAAGTCCAAACCCAAGgtgGAAGTGAAGTCCAAGGTGGAAGTATCCTTACTGGATCTAGATGACTTTTCTCCTGCACCCACAAATGCACCAAAGTCTTTGGTCGTCTCTTCGAGTATGCTGTCCGACCTCGAGGGCCTTTCTCTCTCCAACATCTCCTCCACCATGCAGGTCACCAGTCCATCTTTCGGCCCTGTGAAAACCTACGAGCTGCTTCACCACATGACAGGAAAAGGTCTGTCGGCCAAGTACCATTTCTCCAGGCAGCCCTGTTTGTACCAGCCCAGTATGGTGGCCGTACAGGTCATACTGACCAACAGCTCAGACCACAGTCTGGAGGAGATCCATATAGGAGACCGAAGTCCAGCGAGCCTGAACATCCACTGCTTTAACACCATCGAGCGGCTGGAGCCAGAGGCCTCGGTGACGGTTTCCATGGGTATTGACTTCAGCGACTCGACACAAGCAGCCAACTTCCAGTTGTGCACCAAGGAGGACCAGTTCAGTGTGTCCATCCAGCCTGCTGTGGGAGAGCTATTAATGCCCAGTACCATGACAGAACAGGACTTCAGCAAGGAGCAAGGTAAGCTCCTGGGCATGAATGAGACATCGGCAaccatcaccatggcaacagcaaACCCCTCCAGCCAGGCCATCAGCATGCAGGTCCTGTGCGCAGCCAACGTAGGAGTGGTCTCATCCAGCGGAAACAACTTCCACAGGTTTGCCGGGCGGACAGTCAGCAGCGGGGCCCTGGTCTTGGTGTCGCTGGAGCTGAAGGAGTCCTCCACTGCCCTGCTTACTATCAGCACAGAGAAGAGCGTCATGGCGTCCATGTTGCTCCGAGACCTCAAACAAACCCTTGCTCAGGTGTAGagtccccccctcctccctactCCCTTTAGTAAAGGTAAAGGGGAACAGCACTTCATTAAAGatttcatgtattttatttctgtggttTGGGACAATTCGAGCAGTACTTTCAAACACATCGCACTTTGATCCTGAATACAGAAACCGAAGAAGTAGAgcttgaacttttttttttttttttttgaaaggatTGTCCTGAATCGCAAGAATAACTTTGTGAAGGTTTTGAATAAAGTGATGATCCTCTTTTTAAAACACACAGAAGGCATCATAGACGTGATGGTGAGCTTTTTAGCCTTACCTTGTCCATTATGAGTCACTCCTCAACATGACACTACTCCATCCAGTCATGTCAAACCAACTGGTCATTGACCTCGGTGGTGACTGTTTAAATTGCATGCAATTTATGGATTTGATCAAGTATTATTATGTACAAACAGCTGAACATTCATTTTGAGGGAACAAGTATAATGCTGCCTCCCTCACAGTGCGACAGGCCAATTTGTCTGTTTAATGTTTACACTGATTGAGATACTCCACTAAAGCATTGATCTCTGAGCCAAGCGACCCTGTGTTTGCATTGATTGGAATTTGTTCTTTAGTgccaagaaaaagagaaaaggaggatTCCTCCAGGCCATTTGGACCCATCTAAACCCTCTCATTACAGTATAAACCTTTGCAAGCTGCTGCAACTACAAACTAGCCTCTGTCCCCGATGTAGTGTTACATTCCAGTCTTTACACTGCCCCCAAATCACATTTGTGCCTTCTACGtgaaaataatgtaatttagaAAACCAAACGTATATGTTAGACTTAAATCAACAAGGTCTTTTTACTTGTATGGCTTTTGCTGAACAATAAAAAGtgaatttattaaaacaaa

Function

symbol description
ap3b1 Enables GTP-dependent protein binding activity and protein phosphatase binding activity. Involved in melanosome organization. Located in lysosomal membrane. Implicated in Hermansky-Pudlak syndrome; Hermansky-Pudlak syndrome 2; interstitial lung disease; neutropenia; and pulmonary fibrosis.

NR:

description
AP-3 complex subunit beta-1 isoform X1

GO: NA

KEGG:

id description
K12397 AP3B; AP-3 complex subunit beta

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039779590.1 True 4818 mRNA 0.49 27 27725937 27784006
XM_039779591.1 False 4398 mRNA 0.49 27 27720197 27784006

Neighbor

gene id symbol gene type direction distance location
arsb arsb,LOC102799236 coding upstream 68108 27633737 ~ 27652089 (+)
dmgdh dmgdh coding upstream 89116 27610802 ~ 27631081 (+)
LOC120545398 homer1,LOC102798051 coding upstream 152088 27539440 ~ 27568109 (+)
pik3r1 pik3r1,LOC104930938,LOC103371488,LOC102795099,LOC105915567,LOC102216923 coding upstream 458595 27235532 ~ 27261602 (+)
mast4 mast4,LOC103371489 coding upstream 508056 27110753 ~ 27212141 (+)
tbca tbca coding downstream 45373 27829379 ~ 27844258 (+)
otpa otp,LOC107093773,LOC102789457 coding downstream 65659 27849665 ~ 27854808 (+)
wdr41 wdr41 coding downstream 83652 27867658 ~ 27880080 (+)
LOC120544969 crhbp coding downstream 176320 27960326 ~ 27966434 (+)
ch25hl2 LOC103367457,LOC102290525 coding downstream 211831 27995837 ~ 27997659 (+)
G178210 NA non-coding upstream 14134 27702859 ~ 27706063 (+)
G178205 LOC103362269,LOC105918759 non-coding upstream 111984 27607480 ~ 27608213 (+)
G178198 NA non-coding upstream 146519 27570553 ~ 27573678 (+)
G178166 tia1,LOC100703764,LOC102796970,LOC103362264,LOC101155125 non-coding upstream 196049 27516823 ~ 27524148 (+)
G178155 NA non-coding upstream 206289 27471911 ~ 27513908 (+)
G178256 NA non-coding downstream 29477 27813483 ~ 27813878 (+)
G178266 NA non-coding downstream 148812 27932818 ~ 27933019 (+)
G178267 NA non-coding downstream 154898 27938904 ~ 27939748 (+)
G178348 NA non-coding downstream 427153 28211159 ~ 28211592 (+)
LOC120545668 NA non-coding downstream 738278 28522284 ~ 28524840 (+)
lhfpl2a lhfpl2,LOC101175333 other upstream 22265 27656536 ~ 27697932 (+)
erbin erbin other upstream 654491 27012889 ~ 27065706 (+)
nln nln other upstream 708748 27002459 ~ 27011449 (+)
LOC120545040 LOC103353292 other upstream 789903 26727810 ~ 26930294 (+)
LOC120546038 NA other upstream 1105238 26586647 ~ 26614959 (+)
LOC120545218 NA other downstream 783140 28567146 ~ 28572395 (+)
LOC120544907 hnrnpd,LOC104960871 other downstream 796262 28580268 ~ 28588032 (+)
G178506 NA other downstream 1160501 28944507 ~ 28945444 (+)
ptpn11a ptpn11 other downstream 1222615 29006621 ~ 29083011 (+)
G178529 NA other downstream 1300943 29084949 ~ 29092326 (+)

Expression


Co-expression Network