RNA id: XM_039779591.1


Basic Information

Item Value
RNA id XM_039779591.1
length 4398
RNA type mRNA
GC content 0.49
exon number 27
gene id ap3b1a
representative False

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 27720197 ~ 27784006 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCTCACACTTCCGCTActgcgtgtaaaaaaaaaagttgggtgAAATCTCGGGGAAGTTTGTCTTTGCAGGAACTTTATACGCTACGTTACACTAATTACACTAACATTTCCTTACTTTTATGAGCAGCTTAAAAGCCGGAAGAGGAGCAGAATATACATTTACTTCTCGTGGCACTCGTTTAAACGTTGAGCATGTCGACGACCGTCTCGTACAATGACCAAGGAGGAGCGGAGGCTGCAGTGGAAGCGGGGCTGGAGAGCACCCCGACCACCTCCAGCACCGCCGGGGCTGCCTTTGGACTTTTCAGCGCTGACTTTAAAAAGAATGAAGACCTTAAAGAGATGTTGGAGAGCAACAAGGATTCGCTCAAACTGGAAGCCATGAAAAGGGTTGTTGGGctgATTGCCAAAGGGAAAAATGCATCTGAGCTGTTTCCTGCTGTCGTGAAGAACGTTGCGAGTAAGAACATCGAGCTTAAGAAGCTTGTATATGTGTACCTGGTGAGGTATGCAGAAGAGCAGCAGGACCTGGCTTTGCTATCCATCAGCACCTTCCAGCGGGCCCTCAAGGACCCAAACCAGTTTATCCGGGGCAGCGCACTGAGGGTTTTGTCTAGTATCCGCGTCCCCATAATTGTCCCCATCATGATGCTGGCCATCAAGGAGGCTGCAGCTGACCTGTCCCCATATGTCAGGAAGACATCGGCCCATGCTATCCAGAAGCTCTACAGCATGGATCCAGACCAGAAAGAGCAGCTGATCGAAGTGATAGAGAAACTATTGAAAGACAAAAGCACACTGGTGGCCGGCAGTGTGGTGATGGCTTTTGAGGAAGTGTGTCCAGATCGCATTGACTTGATCCATAAGAACTACAGAAAGCTGTGTAACCTGTTGGTGGATGTGGAGGAGTGGGGCCAGGTGGTCATCATCTCCATGCTGACGCGCTACGCCAGGACGCAGTTCACCAGTCCCTGGAAGGAGGGTGCCATGTTCGATGAGAACAATGAGAAGGCGTTCTATGACTCTGACTCGGAGGAGAAAAAAGACCAGAAGGAGGCCCAACCTTACATCATGGATCCCGATCACAGGCTGCTGCTCAGGAACACCAAACCTCTACTGCAGAGCAGGAACACTGCTGTGGTGATGTCTGTCGCTCAACTCTATTGGCATTTGGCCCCTAAGCATGAAGTCAACATTGTCACCAAATCACTGGTTCGACTACTAAGAAGCCACAGAGAGGTGCAGTACATTGTGCTTCAGAATATTGCCACGATGTCCATTCAGAGGAAGGGGATGTTTGAGCCCTTCATGAAGAGTTTCTATGTGAGATCTACAGATGCCACACACATCAAAACACTGAAGTTGGAGATCCTGACCAACCTGGCCAATGAAGCCAACATCTCCACTATTCTGAGGGAATTTcagacctatgtgaagagccaggacaaGGCGTTTGCAGCAGCCACCATTCAGGCCATCGGCAGATGTGCCACCAACATCACCGAGGTGACAGACACTTGTCTCAACGGTCTGGTGCTGCTGCTTTCCAACAGAGACGAGACTGTAGTGGCCGAGAGCGTGGTGGTGATCAAGAAGTTGCTTCAGACTCAGCCCACCCAGCACAGTGAGATCATCAAACACATGGCCAAGCTCTTCGACAACATCACTGTCTCCATGGCCCGAGCTAGCATCCTGTGGCTGATGGGAGAGTACTGTGAGAGGGTGCCAAAAATTGCCCCTGATGTACTCCGTAAGATGGCAAAGACTTTCACAGCAGAGGAGGACATTGTCAAGTTGCAGACAGTCAACCTAGCAGCCAAACTCTACCTGACCAACTCCAAGCAGACTAAGCTGCTGACCCAGTACATCCTGAACCTCGGCAAATACGACCAGAGCTACGATATCAGAGACCGAACACGCTTCATAAGACAGCTGATAGTGCCCAACGAGAAGAGCGGCGCCCTCAACAAGTACGCTCGACGCATCCTACTGGCCCCCAAACCAGCCCCAGTGCTCGAGTCCGCCTTCAAAGATCGCGACCGTTACCAACTGGGCACTCTCTCCCACAGCCTCAATACTAAAGCTGCTGGATACCTGGAGCTCTCCGACTGGCCAGCTGTTGCTCCTGACCAGTCTGTGAGGAACGTGGAGGTCATTGAGCCAGTGCAAGAGTGGGCGCCGTTAGTTGGGAAGACCAAGAAACCCAAGTCTGACAAGTTCTACTCGGACGAcgaagaggagaaagaagaggaaagatCTGAGAGCAGCGGCAGCgaagacagcagcagcagcagcagcagtagtagtgaagAGTCAGGCAGTGAGAGTGAGGAGGAAAGCAGTGAAGAGTCAGACAAGACCTCCAGTGATTCTGGAAAAAGTTCCAGTGGATCTGAAAAGAGCTCCAGTGAATCTGAATcggaacaaaaaaagaagaaaaagatgacGAAGGCACCGCAGAAGAAAAGCAAACCAACTGCTGCTTTCAGtgacTCGGATGAAAACGGAAATGGACCTGTAGCCCAAGCTAGCAGCTCGTCAGCCGAAAGCTCATCCGACTCAGAGACAGACTCCGAGGACGATTCAGACTCCGACCCCCCCCTAAcacaacagaagaagaagaagaagagcgaGGAAAAGTCCAAACCCAAGgtgGAAGTGAAGTCCAAGGTGGAAGTATCCTTACTGGATCTAGATGACTTTTCTCCTGCACCCACAAATGCACCAAAGTCTTTGGTCGTCTCTTCGAGTATGCTGTCCGACCTCGAGGGCCTTTCTCTCTCCAACATCTCCTCCACCATGCAGGTCACCAGTCCATCTTTCGGCCCTGTGAAAACCTACGAGCTGCTTCACCACATGACAGGAAAAGGTCTGTCGGCCAAGTACCATTTCTCCAGGCAGCCCTGTTTGTACCAGCCCAGTATGGTGGCCGTACAGGTCATACTGACCAACAGCTCAGACCACAGTCTGGAGGAGATCCATATAGGAGACCGAAGTCCAGCGAGCCTGAACATCCACTGCTTTAACACCATCGAGCGGCTGGAGCCAGAGGCCTCGGTGACGGTTTCCATGGGTATTGACTTCAGCGACTCGACACAAGCAGCCAACTTCCAGTTGTGCACCAAGGAGGACCAGTTCAGTGTGTCCATCCAGCCTGCTGTGGGAGAGCTATTAATGCCCAGTACCATGACAGAACAGGACTTCAGCAAGGAGCAAGGTAAGCTCCTGGGCATGAATGAGACATCGGCAaccatcaccatggcaacagcaaACCCCTCCAGCCAGGCCATCAGCATGCAGGTCCTGTGCGCAGCCAACGTAGGAGTGGTCTCATCCAGCGGAAACAACTTCCACAGGTTTGCCGGGCGGACAGTCAGCAGCGGGGCCCTGGTCTTGGTGTCGCTGGAGCTGAAGGAGTCCTCCACTGCCCTGCTTACTATCAGCACAGAGAAGAGCGTCATGGCGTCCATGTTGCTCCGAGACCTCAAACAAACCCTTGCTCAGGTGTAGagtccccccctcctccctactCCCTTTAGTAAAGGTAAAGGGGAACAGCACTTCATTAAAGatttcatgtattttatttctgtggttTGGGACAATTCGAGCAGTACTTTCAAACACATCGCACTTTGATCCTGAATACAGAAACCGAAGAAGTAGAgcttgaacttttttttttttttttttgaaaggatTGTCCTGAATCGCAAGAATAACTTTGTGAAGGTTTTGAATAAAGTGATGATCCTCTTTTTAAAACACACAGAAGGCATCATAGACGTGATGGTGAGCTTTTTAGCCTTACCTTGTCCATTATGAGTCACTCCTCAACATGACACTACTCCATCCAGTCATGTCAAACCAACTGGTCATTGACCTCGGTGGTGACTGTTTAAATTGCATGCAATTTATGGATTTGATCAAGTATTATTATGTACAAACAGCTGAACATTCATTTTGAGGGAACAAGTATAATGCTGCCTCCCTCACAGTGCGACAGGCCAATTTGTCTGTTTAATGTTTACACTGATTGAGATACTCCACTAAAGCATTGATCTCTGAGCCAAGCGACCCTGTGTTTGCATTGATTGGAATTTGTTCTTTAGTgccaagaaaaagagaaaaggaggatTCCTCCAGGCCATTTGGACCCATCTAAACCCTCTCATTACAGTATAAACCTTTGCAAGCTGCTGCAACTACAAACTAGCCTCTGTCCCCGATGTAGTGTTACATTCCAGTCTTTACACTGCCCCCAAATCACATTTGTGCCTTCTACGtgaaaataatgtaatttagaAAACCAAACGTATATGTTAGACTTAAATCAACAAGGTCTTTTTACTTGTATGGCTTTTGCTGAACAATAAAAAGtgaatttattaaaacaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU241251 lncRNA upstream 14134 27702859 ~ 27706063 (+) True G178210
TU241244 lncRNA upstream 111984 27607480 ~ 27608213 (+) True G178205
TU241237 lncRNA upstream 146519 27570553 ~ 27573678 (+) True G178198
TU241193 lncRNA upstream 196049 27517476 ~ 27524148 (+) False G178166
TU241195 lncRNA upstream 198241 27516823 ~ 27521956 (+) True G178166
TU241305 lncRNA downstream 29477 27813483 ~ 27813878 (+) True G178256
TU241315 lncRNA downstream 148812 27932818 ~ 27933019 (+) True G178266
TU241316 lncRNA downstream 154898 27938904 ~ 27939748 (+) True G178267
TU241421 lncRNA downstream 427153 28211159 ~ 28211592 (+) True G178348
XR_005636721.1 lncRNA downstream 738278 28522284 ~ 28524840 (+) True LOC120545668
XM_039780750.1 mRNA upstream 22265 27656536 ~ 27697932 (+) True lhfpl2a
XM_039780752.1 mRNA upstream 22265 27656536 ~ 27697932 (+) False lhfpl2a
XM_039780751.1 mRNA upstream 22265 27682699 ~ 27697932 (+) False lhfpl2a
XM_039780630.1 mRNA upstream 68108 27633737 ~ 27652089 (+) True arsb
XM_039779633.1 mRNA upstream 89116 27610802 ~ 27631081 (+) True dmgdh
XM_039780363.1 mRNA downstream 45373 27829379 ~ 27844258 (+) True tbca
XM_039778922.1 mRNA downstream 65659 27849665 ~ 27854808 (+) True otpa
XM_039778923.1 mRNA downstream 65659 27849665 ~ 27854808 (+) False otpa
XM_039779689.1 mRNA downstream 83652 27867658 ~ 27880080 (+) True wdr41
XM_039778877.1 mRNA downstream 176320 27960326 ~ 27966434 (+) True LOC120544969
XR_005636773.1 other upstream 22265 27656536 ~ 27697932 (+) False lhfpl2a
TU241015 other upstream 708802 27010197 ~ 27011395 (+) False nln
XR_005636776.1 other upstream 1105238 26586647 ~ 26614959 (+) True LOC120546038
XR_005636601.1 other downstream 796262 28580268 ~ 28588026 (+) False LOC120544907
TU241633 other downstream 1160501 28944507 ~ 28945444 (+) True G178506
TU241682 other downstream 1300943 29084949 ~ 29092326 (+) True G178529
TU242100 other downstream 1958617 29742623 ~ 29744075 (+) True G178845
TU242091 other downstream 2010138 29794144 ~ 29795314 (+) False LOC120545429

Expression Profile