RNA id: TU241015


Basic Information

Item Value
RNA id TU241015
length 779
RNA type TUCP
GC content 0.41
exon number 3
gene id nln
representative False

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 27002459 ~ 27011449 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cacagcaGCCCTCATGCAGATACAGCTGAGGTGTTTGCAAAGCACTGTAAGGAAATCCTGGGCGTTCCTGCTACGCCAGGTACCAATATGACAGCCAGTTTCAGCCACTTGGTTGGAGGATATGATGGCCAGTACTACAGCTATCTGTGGAGTGAAGTCTACTCCATGGACATTTATTTCAATCGTTTTAAAAAGGAAGGCATTATGAATCCAAAGGTTGGACAAGAGTACAGAAGGGTGATTCTGGAAACTGGTGGCTCTGTGGATGGCATGGACATGCTGAAAACCTTCCTTGGCCGTGGCCCATGCCAGGATGCCTTCTTTCAGTGCAAAGGACTGATTAAGTCACAGGAAACACAGACGTTGTAATTTGATATATTCTTTAAGAGTCTTTTTGTCAAAGCAATGTATATTTTAATTGTCTAGATGCAGCAGGGCTATGTCAGTAGAAACATGGCTTTGCTTGAAGTGTATTAATGCTGCGTTTTTAAGCGTTTCTACTTGATGATTTGTAACTGTTGGTATTTGTTCAAATGTACAGTAGATCATTGAGGGTCTTATGATGTTATGTACAATTGGCCTTTTTCACATGTGTTACTAATACCATTAACGATGGCTTTGTTTTATTCAAGCGTCCCATTAAGCGATGGCAAAAGACAATACTATGACCCTTAAAACAAAGCAGCTAAAATGGAATTCCACCAGCATTAATTTAATTGTTTACGCCTTTGCTTGTCCTACTTTGACATGTGAAGATGTCTCAATTTGTGCACAGCTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU240899 lncRNA upstream 263937 26727838 ~ 26746260 (+) False LOC120545040
XR_005636783.1 lncRNA upstream 317309 26691381 ~ 26692888 (+) True LOC120546076
TU240870 lncRNA upstream 495235 26514526 ~ 26514962 (+) True G177937
TU240788 lncRNA upstream 598184 26336307 ~ 26412013 (+) False LOC120545651
TU240792 lncRNA upstream 636509 26369841 ~ 26373688 (+) True G177876
TU241014 lncRNA downstream 53882 27065277 ~ 27065705 (+) False erbin
TU241021 lncRNA downstream 93383 27104778 ~ 27105030 (+) True G178045
TU241182 lncRNA downstream 460516 27471911 ~ 27513908 (+) True G178155
TU241195 lncRNA downstream 505428 27516823 ~ 27521956 (+) True G178166
TU241193 lncRNA downstream 506081 27517476 ~ 27524148 (+) False G178166
XM_039780711.1 mRNA upstream 17418 26981156 ~ 26992779 (+) True trappc13
XM_039780713.1 mRNA upstream 17418 26981156 ~ 26992779 (+) False trappc13
XM_039780714.1 mRNA upstream 17418 26981156 ~ 26992779 (+) False trappc13
XM_039780715.1 mRNA upstream 17418 26981156 ~ 26992779 (+) False trappc13
XM_039780512.1 mRNA upstream 31014 26977461 ~ 26979183 (+) True LOC120545882
XM_039779811.1 mRNA downstream 1494 27012889 ~ 27065706 (+) False erbin
XM_039779810.1 mRNA downstream 1496 27012891 ~ 27065706 (+) True erbin
XM_039779812.1 mRNA downstream 29212 27040607 ~ 27062828 (+) False erbin
XM_039780555.1 mRNA downstream 65115 27076510 ~ 27091059 (+) False srek1
XM_039780556.1 mRNA downstream 65537 27076932 ~ 27091059 (+) True srek1
XR_005636776.1 other upstream 395238 26586647 ~ 26614959 (+) True LOC120546038
XR_005636774.1 other upstream 395238 26586647 ~ 26614959 (+) False LOC120546038
XR_005636775.1 other upstream 395238 26586647 ~ 26614959 (+) False LOC120546038
XR_005636777.1 other upstream 395238 26589511 ~ 26614959 (+) False LOC120546038
TU240757 other upstream 786599 26223115 ~ 26223598 (+) True G177848
XR_005636773.1 other downstream 645141 27656536 ~ 27697932 (+) False lhfpl2a
XR_005636601.1 other downstream 1568873 28580268 ~ 28588026 (+) False LOC120544907
TU241633 other downstream 1933112 28944507 ~ 28945444 (+) True G178506
TU241682 other downstream 2073554 29084949 ~ 29092326 (+) True G178529
TU242100 other downstream 2731228 29742623 ~ 29744075 (+) True G178845

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000304_04407815_04421342.mRNA True 2701 mRNA 0.47 13 CI01000304 4407354 ~ 4421434 (+)