RNA id: XM_039780512.1


Basic Information

Item Value
RNA id XM_039780512.1
length 453
RNA type mRNA
GC content 0.51
exon number 4
gene id LOC120545882
representative True

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 26977461 ~ 26979183 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGCTGGTGCATGCTGGACTGATGCTTCTGGCTCTGCTTCTGTCCGTCCTCGGCCTGTGTGCCGTGTTTGACTTCCACAGAGGCTTCCACATCCCTAACCTTTACTCTCTGAACAGCTGGGTGGGCATCTGTACTGTGCTAATTGGGTCCTTGGTATGGCTTCCGGGTTCTCCGCTATGGTTCCACAGCAGCACCCTGAAACCTGTCTATATctggatgggaaaagtaatGCTTATCCTCTGTCTGGCCTCCTGCATTAGTGGCATCAATGAGAAACTGCTCCTTACTCTTGGTAACCCGTACAACTCTCTGCCTGTGGAAGCAAAGTTTGAAAACTCCCTTGGCATCCTCGTTGCGGCCTTTGGATTGGTCGTCTTTGGCATCCTGTCCAAAAACAGATGGCAGCGGCCGGAAATAGATAGTGAACGTGCTGATctCTGCATGGCTTACTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU240899 lncRNA upstream 231201 26727838 ~ 26746260 (+) False LOC120545040
XR_005636783.1 lncRNA upstream 284573 26691381 ~ 26692888 (+) True LOC120546076
TU240870 lncRNA upstream 462499 26514526 ~ 26514962 (+) True G177937
TU240792 lncRNA upstream 603773 26369841 ~ 26373688 (+) True G177876
TU240790 lncRNA upstream 616189 26360394 ~ 26361272 (+) True G177874
TU241014 lncRNA downstream 86094 27065277 ~ 27065705 (+) False erbin
TU241021 lncRNA downstream 125595 27104778 ~ 27105030 (+) True G178045
TU241182 lncRNA downstream 492728 27471911 ~ 27513908 (+) True G178155
TU241195 lncRNA downstream 537640 27516823 ~ 27521956 (+) True G178166
TU241193 lncRNA downstream 538293 27517476 ~ 27524148 (+) False G178166
XM_039780471.1 mRNA upstream 2076 26973755 ~ 26975385 (+) True LOC120545850
XM_039778982.1 mRNA upstream 11338 26940154 ~ 26966123 (+) True LOC120545041
XM_039778981.1 mRNA upstream 47167 26727810 ~ 26930294 (+) True LOC120545040
XM_039780785.1 mRNA upstream 362502 26586647 ~ 26614959 (+) False LOC120546038
XM_039779805.1 mRNA upstream 391248 26566849 ~ 26586213 (+) False zgc:162472
XM_039780711.1 mRNA downstream 1973 26981156 ~ 26992779 (+) True trappc13
XM_039780713.1 mRNA downstream 1973 26981156 ~ 26992779 (+) False trappc13
XM_039780714.1 mRNA downstream 1973 26981156 ~ 26992779 (+) False trappc13
XM_039780715.1 mRNA downstream 1973 26981156 ~ 26992779 (+) False trappc13
XM_039780573.1 mRNA downstream 23276 27002459 ~ 27011449 (+) True nln
XR_005636776.1 other upstream 362502 26586647 ~ 26614959 (+) True LOC120546038
XR_005636774.1 other upstream 362502 26586647 ~ 26614959 (+) False LOC120546038
XR_005636775.1 other upstream 362502 26586647 ~ 26614959 (+) False LOC120546038
XR_005636777.1 other upstream 362502 26589511 ~ 26614959 (+) False LOC120546038
TU240757 other upstream 753863 26223115 ~ 26223598 (+) True G177848
TU241015 other downstream 31014 27010197 ~ 27011395 (+) False nln
XR_005636773.1 other downstream 677353 27656536 ~ 27697932 (+) False lhfpl2a
XR_005636601.1 other downstream 1601085 28580268 ~ 28588026 (+) False LOC120544907
TU241633 other downstream 1965324 28944507 ~ 28945444 (+) True G178506
TU241682 other downstream 2105766 29084949 ~ 29092326 (+) True G178529

Expression Profile