LOC120545041 (LOC104936786,LOC103353268,LOC104946837)


Basic Information

Item Value
gene id LOC120545041
gene name LOC104936786,LOC103353268,LOC104946837
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 26940154 ~ 26966123 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039778982.1
cgaaggggaaaaaaagtcttCAGTGGTGCTCAGACTAGTGTCTCTCAGTTCCCTGAAAAACGCTGTAAAGATTTGTCATTGACGAGTAAACTCATGAAAGAAACCGGGCGACGGACAGTTTTAAAGCTGGACttgtgctgctgttttctttttcgctgtaattgtgttttttaGAGATTTTAAACTGGTTGGTTTGTGACGCGTAGTCGCCGGGATTTCCTCTCATCTCGAAGTTCCCAAGATGAACTTCGGTCCGGTGGTCGGGAAACTTTCTGTGTTTGCAGCAGCGCTCCTCATCGGGCTGGTTTGTCACGCAGCAGAACCTCCAGCATCTCAGTGGTCCAGCGAtgaatacacaaacaaaaacctcACTCTTCGACAACACAGGACATGTGTTGAGAATGAGCAGTATCTCCACCAGGGACTCTGCTGCCTCAATTGCCAGGCTGgaTCCTTTGTGCAGAAGGGATGTGAAAGAGACCAAGAACACGGGACGTGTCTTCCCTGTGAGCACGGACAGACCTACACAGAGCACTCCAACGGGATGAACCGCTGTTTGCCCTGTACACACTGCCGCTCAGATGAGATTCAAACTGCATCCTGCACCACGACTACAGACACCAGGTGCCAGTGCAGACCAGGGACCTTCTGTGTCCCAGATCAGGCCTGCGAAGTCTGCAAACGTTGTGCCAAGTGTAAATCtggagaggaggaggtgaaGAAGTGCACCCCGTTCTCTAACACGGAGTGTCGGAAACGGGATCCGTCCCCAACCGAGACCTCCCCAGCCCTTCCTTTACCGACCCCTACTTCTTCTGCAGACATTGTTTCGCCTATATGCATTTCCCTggccatcatcttcatcatcctcATTAGCGTGGCTGTGTGGTTCGTAATCAAGCAGCGTTCATGGGAAATACCATGTTCAAAGAGCCACTGTGATTCCAGTGAAATTGTGAAGATTCCTATTgATGAGAGTGGAGCTACAGCggaggagagacagaacaaTCAGAACGCAGGTCTGGAGGGGGAAGAGTCTCGCCCAGAGTCCCGGCCCCTGCTACAGGAGACCCAGCCTGGCATGACCAAGGCCTCCCCTCCCCTCGAAGATGAGGACCGAGGACTAGGAGACAGTTTGCCAAACACCACTAGTTCGTCTCAGACTAGCCTGTCGGCCCTGCCCACTGCAGCTTCCTCTGGTAACACCCCACACCAGAGCCCCATTGCCATCAGACCGCCGCCTGCAGACATGGATGATCCTTTGCTACATCGATTGGTGCCACTACAAGGGTCAGAAAGATCCCTAAAGAAGAGCTTTGATTTGTTCGACGAGTACCTGGATGTGCGGATCCATAACAAGTTTTTCAGAATGATTGGAGTCAGTGACAACCACATTCGGATTGCGGAGAATGGAGCCCCTGTTGACAAAGTGTATGAACTGCTGAAGAACTGGATGCAGAGGCAGGGCCTAAAAGCCGACATCAACGACCTGTTGGAGGCTTTGCTAAGTATGGACCAGCGACGCTCGGCCGAGAGCATCGCCTCCGCAGCCCTGCAGAGAGGCTACTACAAGCACGCAGACACGCCCTGAAAGCCGAAGAAACGGGGACTGCAAATGAAGTAAACacaaaatacttaacacaagaacaactaaaagcacATCGACACTGTCGGTGGACATTGTGTTACGAACGGGGCTTACCTCTCTGTGGCGGACCGGCCATGTATTCAAAAGCCAgtagttttaaaaagaaaaacacaaaaaggggAAGTTCGAGCCGTATTTATCAGAGCTCTGAAGATGTTGACTACTTGCCAAAAGCGGAGGTGTAAtgatgaaaatgaagaaaaagttTTGTGGTTAAATTGAACAACCTGCCCGCCAAAGACAACCATGATAATGTGTTCCAAAAGAGCAGATTAACATGAAGGTGTCAGCGTCCACAGGCAGAAACGGCTGCATGTTTTAGGCTCCAATGAAGAAACATGCATCCAAATACTGAAAGCTTAGAAGTCTCTGGGCGCGTGTCACACATCTGGTCCTCTACCCAGATCACAATACACTACCTGGAGACGGGATATACACTGGTTATTAgtggcatcagctgtgtcaCTAATACTGTGCCGCTTTGATGCACTGACCTCTGGCACATGTAGTATTTAAAACAATCATGctatatttgttgttttatagATTTAGGCTTCTCTGAAAACATATGAAACAGTTCGTGAACATTTTCTTGACTAATGGTATGAAAATATCATCCATTTGTTACGACGGTCAATTTACAGCCTTACTAATCATTAGTTTTACCTCTTCAGGGCCATTTGATAATCTAAGTGTATTTAGCTATCATTTCATTATGTTCATAGAGCATACTGATTCAAAAATGTCATAGATTTTGTACAATCAAGTCCCATTGGAGAAATGTTTTCAGTCTTTGTCGTCCGGCTTTTTGTGTGTTCAGtgttactacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacatacaacattgTAGAAGGAATAGTTTCTGTTGGAACAATAGTTTAGTTAAATGTTTCCATGGAGAACTTCAGaggtcatttttatttattgacatatttattgtaatgaataataattcacttttattatttataccATTACCAAAACAAATGCCCCTGGAAAATAAGCATgcgctgtatttgtgttttgatAACATTTAGCTTCAGGGCAAAATGACTGACAAAATTTTCAAGGCGGGGTTGGAACGTAGTGTTTAGTTAAACTCTGTTTATGCTTGCGTTTGGTCCACACTATCAATGTTACGTGTGCCATTTCTTCACCAGAGACGACATTCAGCAGAATGTGGAAGCCTTCATGAGGCTAAATGCCGAATGTGTCATTTCAAATCGGCGATGAGGTGACACCAATGTTAGAAAATGAGGATTGACGTGTTGAGTCCAACCGTTTAAAGTGAGCCGACTgtgctcctgtgtgtgtctgcggtgATGTGGGATGCAGGTACGGATTGTTTTGACGTGGTTAGACTCAGACAAGATGAAGGAaactctattttattttttatttttctggatTTAAGAAGAAGCTCAGATTTATTTCCCTCATTCTGCCACATGTACATACAAATTCAGTCCAGAGAGCATTGATGCCTCAGaaagtgtatatgtgtatatatgcagCTCTATTAACAAACCAAAATGAATATAGAAAGGTATGAAGTCATTTAGAACAACAGAAACACCAACCACATTAGTTGGCTGTTGAGattgtgacattttaaactAGATTTTGCCCATTTTTCTGTAGTCTCTTATGTAAAAAGGAAAGCGTTACAGAGTTCTATATTATTGCTGAAGAGCGATGCTACAGTGCTGGCACTGCCATCTATTGACAGACAATGAAAATACAGCCAGCATCAATTTCTAGGGATCCTATACACCCCTCTCTCACCTAACATTCTCCTGTTTAGACATTtctcaacttttttttcctttttttttgtttgtttattcctcTTGGCCTTTCCTGAAGTAGCATAGCAGGAGATGTGTGCTTCAGTGCATGTTTTGTTCACTCTGTGGCAGCAGTTGATGTGAGTGTATGTCTTCTCTTTTTATAATTTCTGTTTTACATATTTCATTGCAAGTCCTAAGCTGTTCAATTAACTTCCTTTTTACTTGTGTAAAAACGTCTGTTTGCCATTTCCCCCTTAGTTATTGTTTGCTTGTCATGGATTTCAGCTATAAATTATGCAAATCAAAGCTCTTTTTATGTCaatttcaaataaatgttttgtacAGAT

Function

NR:

description
tumor necrosis factor receptor superfamily member 10B-like precursor

GO:

id name namespace
GO:0007165 signal transduction biological_process

KEGG:

id description
K04722 TNFRSF10A_B, TRAILR1_2, DR4_5, CD261_2; tumor necrosis factor receptor superfamily member 10A/B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039778982.1 True 3844 mRNA 0.44 10 26940154 26966123

Neighbor

gene id symbol gene type direction distance location
zgc:162472 NA coding upstream 353941 26566849 ~ 26586213 (+)
dab2 dab2 coding upstream 375547 26555227 ~ 26564607 (+)
gas1b LOC103353277,LOC104953345 coding upstream 407799 26530224 ~ 26532355 (+)
fbp1b LOC103389985,LOC104953344,LOC103353278 coding upstream 420980 26512823 ~ 26519174 (+)
LOC120545806 LOC103353293,LOC100699672 coding upstream 464684 26473566 ~ 26475470 (+)
LOC120545850 NA coding downstream 7632 26973755 ~ 26975385 (+)
LOC120545882 NA coding downstream 11338 26977461 ~ 26979183 (+)
trappc13 trappc13 coding downstream 15033 26981156 ~ 26992779 (+)
srek1 srek1,LOC106947217,LOC103154506,LOC106917056 coding downstream 110387 27076510 ~ 27091059 (+)
mast4 mast4,LOC103371489 coding downstream 144630 27110753 ~ 27212141 (+)
LOC120546076 NA non-coding upstream 247266 26691381 ~ 26692888 (+)
G177937 NA non-coding upstream 425192 26514526 ~ 26514962 (+)
G177876 NA non-coding upstream 566466 26369841 ~ 26373688 (+)
G177874 NA non-coding upstream 578882 26360394 ~ 26361272 (+)
G177802 nsa2 non-coding upstream 942456 25995444 ~ 25997698 (+)
G178045 NA non-coding downstream 138655 27104778 ~ 27105030 (+)
G178155 NA non-coding downstream 505788 27471911 ~ 27513908 (+)
G178166 tia1,LOC100703764,LOC102796970,LOC103362264,LOC101155125 non-coding downstream 550700 27516823 ~ 27524148 (+)
G178198 NA non-coding downstream 604430 27570553 ~ 27573678 (+)
G178205 LOC103362269,LOC105918759 non-coding downstream 641357 27607480 ~ 27608213 (+)
LOC120545040 LOC103353292 other upstream 9860 26727810 ~ 26930294 (+)
LOC120546038 NA other upstream 325195 26586647 ~ 26614959 (+)
LOC120545651 mol1a,LOC100706667,LOC102220180,LOC105027268,LOC103353284,LOC106562938,LOC103389989 other upstream 528141 26336307 ~ 26412013 (+)
G177848 btf3,LOC104954705,LOC107080991 other upstream 695263 26219481 ~ 26244891 (+)
G177809 hexb,LOC102784651 other upstream 918323 26018164 ~ 26021831 (+)
nln nln other downstream 36336 27002459 ~ 27011449 (+)
erbin erbin other downstream 46766 27012889 ~ 27065706 (+)
lhfpl2a lhfpl2,LOC101175333 other downstream 690413 27656536 ~ 27697932 (+)
LOC120545218 NA other downstream 1601023 28567146 ~ 28572395 (+)
LOC120544907 hnrnpd,LOC104960871 other downstream 1614145 28580268 ~ 28588032 (+)

Expression


Co-expression Network