G177848 (btf3,LOC104954705,LOC107080991)


Basic Information

Item Value
gene id G177848
gene name btf3,LOC104954705,LOC107080991
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 26219481 ~ 26244891 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU240757
TCACGTTTTAATCTCGCGGgtcgagatctcgtcacacctctaaCTTCAGCGTGATTATGAGGTTACTGACCCTGTTTGGGCAGGGCCTCGGCAAGCCTCCTGAGGCTGGTCAGGCTATCGGCTCCCAGCTGGTTCAGGATCCCCGGCAGCATCTCGGTCAGCTGCTTGGTCTCAGCGTGGCCGGTGATGGTGAAGGTGTTGGCTGCGAGGGACGCCTGCACTTTGGGATTGTTGAAGTGGATGACTGTCCCTTGGTTTGTAAACATGTTAACCTCCTCAATACCAGAGATGTTGTTGACGCCGAGTTTCTTTAAGGAGAACTGGAGCTTCTTGTCATCTGCGGTTGCTGTTCTGTGTACAACCTTCTTCTTTCTGCGAGCACTCCCCTATGGAGACATT
>TU240758
ttggcTATTTATTGACAGTAGCAAAGGTTTATTTTATTCCAGATATGGTGGTTTGAGTGaggccacaaagaattaaggttCAGTAACATAGGAGGAAAAAGACGCACAGTGGGAGACTTGTACGCCAAGTTTTACACACAATCTCTCACTCTACCTGGACATACAGAGCACAACAATCATTTGTAGAGTCTGGTGGACAAGAAGTGGAATGAGTACTAAAATACATTAGGCTTAAAATACTGCTACCCCTGGTTTTTAATATGAGTACTATTCTAGAAAATGTACTCAAAAATAATTCACTTAAGAGtagacaaatatttttttttttttttttctctttttt

Function

symbol description
btf3 Predicted to be part of nascent polypeptide-associated complex. Predicted to be active in cytosol and polysomal ribosome. Orthologous to human BTF3 (basic transcription factor 3).

NR:

description
PREDICTED: transcription factor BTF3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU240757 True 399 TUCP 0.53 2 26223115 26223598
TU240758 False 343 lncRNA 0.34 2 26219481 26244891

Neighbor

gene id symbol gene type direction distance location
ankra2 ankra2 coding upstream 1208 26210937 ~ 26218273 (+)
enc1 enc1,LOC106529253,LOC104945826 coding upstream 176181 26031698 ~ 26043300 (+)
gfm2 gfm2,LOC102784364 coding upstream 214374 25997920 ~ 26005107 (+)
LOC120545449 LOC104943206,LOC100700751,LOC102783804,LOC103374055,LOC102290254,LOC101481254,LOC102208360 coding upstream 226305 25982681 ~ 25993176 (+)
LOC120545450 NA coding upstream 232803 25982670 ~ 25986678 (+)
dck dck,LOC102787471 coding downstream 168209 26413100 ~ 26421846 (+)
LOC120545881 LOC103353282,LOC104952208 coding downstream 178194 26423085 ~ 26464694 (+)
LOC120545806 LOC103353293,LOC100699672 coding downstream 228675 26473566 ~ 26475470 (+)
fbp1b LOC103389985,LOC104953344,LOC103353278 coding downstream 267932 26512823 ~ 26519174 (+)
gas1b LOC103353277,LOC104953345 coding downstream 285333 26530224 ~ 26532355 (+)
G177802 nsa2 non-coding upstream 221783 25995444 ~ 25997698 (+)
G177769 NA non-coding upstream 289197 25928297 ~ 25930284 (+)
G177760 NA non-coding upstream 393492 25825743 ~ 25825989 (+)
LOC120545910 NA non-coding upstream 406246 25812468 ~ 25813235 (+)
G177751 LOC103360605,LOC101079510 non-coding upstream 486477 25729673 ~ 25733004 (+)
G177874 NA non-coding downstream 115503 26360394 ~ 26361272 (+)
G177876 NA non-coding downstream 124950 26369841 ~ 26373688 (+)
G177937 NA non-coding downstream 269635 26514526 ~ 26514962 (+)
LOC120546076 NA non-coding downstream 446490 26691381 ~ 26692888 (+)
G178045 NA non-coding downstream 859887 27104778 ~ 27105030 (+)
G177809 hexb,LOC102784651 other upstream 197650 26018164 ~ 26021831 (+)
G177759 NA other upstream 370359 25829718 ~ 25849122 (+)
G177715 NA other upstream 685792 25533132 ~ 25533689 (+)
zgc:63972 cuta,LOC103373665 other upstream 914449 25245562 ~ 25305032 (+)
G177596 map1b other upstream 1507840 24702971 ~ 24711641 (+)
LOC120545651 mol1a,LOC100706667,LOC102220180,LOC105027268,LOC103353284,LOC106562938,LOC103389989 other downstream 91416 26336307 ~ 26412013 (+)
LOC120546038 NA other downstream 341756 26586647 ~ 26614959 (+)
LOC120545040 LOC103353292 other downstream 482919 26727810 ~ 26930294 (+)
nln nln other downstream 757568 27002459 ~ 27011449 (+)
erbin erbin other downstream 767998 27012889 ~ 27065706 (+)

Expression


Co-expression Network