RNA id: XM_039778982.1


Basic Information

Item Value
RNA id XM_039778982.1
length 3844
RNA type mRNA
GC content 0.44
exon number 10
gene id LOC120545041
representative True

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 26940154 ~ 26966123 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cgaaggggaaaaaaagtcttCAGTGGTGCTCAGACTAGTGTCTCTCAGTTCCCTGAAAAACGCTGTAAAGATTTGTCATTGACGAGTAAACTCATGAAAGAAACCGGGCGACGGACAGTTTTAAAGCTGGACttgtgctgctgttttctttttcgctgtaattgtgttttttaGAGATTTTAAACTGGTTGGTTTGTGACGCGTAGTCGCCGGGATTTCCTCTCATCTCGAAGTTCCCAAGATGAACTTCGGTCCGGTGGTCGGGAAACTTTCTGTGTTTGCAGCAGCGCTCCTCATCGGGCTGGTTTGTCACGCAGCAGAACCTCCAGCATCTCAGTGGTCCAGCGAtgaatacacaaacaaaaacctcACTCTTCGACAACACAGGACATGTGTTGAGAATGAGCAGTATCTCCACCAGGGACTCTGCTGCCTCAATTGCCAGGCTGgaTCCTTTGTGCAGAAGGGATGTGAAAGAGACCAAGAACACGGGACGTGTCTTCCCTGTGAGCACGGACAGACCTACACAGAGCACTCCAACGGGATGAACCGCTGTTTGCCCTGTACACACTGCCGCTCAGATGAGATTCAAACTGCATCCTGCACCACGACTACAGACACCAGGTGCCAGTGCAGACCAGGGACCTTCTGTGTCCCAGATCAGGCCTGCGAAGTCTGCAAACGTTGTGCCAAGTGTAAATCtggagaggaggaggtgaaGAAGTGCACCCCGTTCTCTAACACGGAGTGTCGGAAACGGGATCCGTCCCCAACCGAGACCTCCCCAGCCCTTCCTTTACCGACCCCTACTTCTTCTGCAGACATTGTTTCGCCTATATGCATTTCCCTggccatcatcttcatcatcctcATTAGCGTGGCTGTGTGGTTCGTAATCAAGCAGCGTTCATGGGAAATACCATGTTCAAAGAGCCACTGTGATTCCAGTGAAATTGTGAAGATTCCTATTgATGAGAGTGGAGCTACAGCggaggagagacagaacaaTCAGAACGCAGGTCTGGAGGGGGAAGAGTCTCGCCCAGAGTCCCGGCCCCTGCTACAGGAGACCCAGCCTGGCATGACCAAGGCCTCCCCTCCCCTCGAAGATGAGGACCGAGGACTAGGAGACAGTTTGCCAAACACCACTAGTTCGTCTCAGACTAGCCTGTCGGCCCTGCCCACTGCAGCTTCCTCTGGTAACACCCCACACCAGAGCCCCATTGCCATCAGACCGCCGCCTGCAGACATGGATGATCCTTTGCTACATCGATTGGTGCCACTACAAGGGTCAGAAAGATCCCTAAAGAAGAGCTTTGATTTGTTCGACGAGTACCTGGATGTGCGGATCCATAACAAGTTTTTCAGAATGATTGGAGTCAGTGACAACCACATTCGGATTGCGGAGAATGGAGCCCCTGTTGACAAAGTGTATGAACTGCTGAAGAACTGGATGCAGAGGCAGGGCCTAAAAGCCGACATCAACGACCTGTTGGAGGCTTTGCTAAGTATGGACCAGCGACGCTCGGCCGAGAGCATCGCCTCCGCAGCCCTGCAGAGAGGCTACTACAAGCACGCAGACACGCCCTGAAAGCCGAAGAAACGGGGACTGCAAATGAAGTAAACacaaaatacttaacacaagaacaactaaaagcacATCGACACTGTCGGTGGACATTGTGTTACGAACGGGGCTTACCTCTCTGTGGCGGACCGGCCATGTATTCAAAAGCCAgtagttttaaaaagaaaaacacaaaaaggggAAGTTCGAGCCGTATTTATCAGAGCTCTGAAGATGTTGACTACTTGCCAAAAGCGGAGGTGTAAtgatgaaaatgaagaaaaagttTTGTGGTTAAATTGAACAACCTGCCCGCCAAAGACAACCATGATAATGTGTTCCAAAAGAGCAGATTAACATGAAGGTGTCAGCGTCCACAGGCAGAAACGGCTGCATGTTTTAGGCTCCAATGAAGAAACATGCATCCAAATACTGAAAGCTTAGAAGTCTCTGGGCGCGTGTCACACATCTGGTCCTCTACCCAGATCACAATACACTACCTGGAGACGGGATATACACTGGTTATTAgtggcatcagctgtgtcaCTAATACTGTGCCGCTTTGATGCACTGACCTCTGGCACATGTAGTATTTAAAACAATCATGctatatttgttgttttatagATTTAGGCTTCTCTGAAAACATATGAAACAGTTCGTGAACATTTTCTTGACTAATGGTATGAAAATATCATCCATTTGTTACGACGGTCAATTTACAGCCTTACTAATCATTAGTTTTACCTCTTCAGGGCCATTTGATAATCTAAGTGTATTTAGCTATCATTTCATTATGTTCATAGAGCATACTGATTCAAAAATGTCATAGATTTTGTACAATCAAGTCCCATTGGAGAAATGTTTTCAGTCTTTGTCGTCCGGCTTTTTGTGTGTTCAGtgttactacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacatacaacattgTAGAAGGAATAGTTTCTGTTGGAACAATAGTTTAGTTAAATGTTTCCATGGAGAACTTCAGaggtcatttttatttattgacatatttattgtaatgaataataattcacttttattatttataccATTACCAAAACAAATGCCCCTGGAAAATAAGCATgcgctgtatttgtgttttgatAACATTTAGCTTCAGGGCAAAATGACTGACAAAATTTTCAAGGCGGGGTTGGAACGTAGTGTTTAGTTAAACTCTGTTTATGCTTGCGTTTGGTCCACACTATCAATGTTACGTGTGCCATTTCTTCACCAGAGACGACATTCAGCAGAATGTGGAAGCCTTCATGAGGCTAAATGCCGAATGTGTCATTTCAAATCGGCGATGAGGTGACACCAATGTTAGAAAATGAGGATTGACGTGTTGAGTCCAACCGTTTAAAGTGAGCCGACTgtgctcctgtgtgtgtctgcggtgATGTGGGATGCAGGTACGGATTGTTTTGACGTGGTTAGACTCAGACAAGATGAAGGAaactctattttattttttatttttctggatTTAAGAAGAAGCTCAGATTTATTTCCCTCATTCTGCCACATGTACATACAAATTCAGTCCAGAGAGCATTGATGCCTCAGaaagtgtatatgtgtatatatgcagCTCTATTAACAAACCAAAATGAATATAGAAAGGTATGAAGTCATTTAGAACAACAGAAACACCAACCACATTAGTTGGCTGTTGAGattgtgacattttaaactAGATTTTGCCCATTTTTCTGTAGTCTCTTATGTAAAAAGGAAAGCGTTACAGAGTTCTATATTATTGCTGAAGAGCGATGCTACAGTGCTGGCACTGCCATCTATTGACAGACAATGAAAATACAGCCAGCATCAATTTCTAGGGATCCTATACACCCCTCTCTCACCTAACATTCTCCTGTTTAGACATTtctcaacttttttttcctttttttttgtttgtttattcctcTTGGCCTTTCCTGAAGTAGCATAGCAGGAGATGTGTGCTTCAGTGCATGTTTTGTTCACTCTGTGGCAGCAGTTGATGTGAGTGTATGTCTTCTCTTTTTATAATTTCTGTTTTACATATTTCATTGCAAGTCCTAAGCTGTTCAATTAACTTCCTTTTTACTTGTGTAAAAACGTCTGTTTGCCATTTCCCCCTTAGTTATTGTTTGCTTGTCATGGATTTCAGCTATAAATTATGCAAATCAAAGCTCTTTTTATGTCaatttcaaataaatgttttgtacAGAT

Function

GO:

id name namespace
GO:0007165 signal transduction biological_process

KEGG:

id description
K04722 TNFRSF10A_B, TRAILR1_2, DR4_5, CD261_2; tumor necrosis factor receptor superfamily member 10A/B

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU240899 lncRNA upstream 193894 26727838 ~ 26746260 (+) False LOC120545040
XR_005636783.1 lncRNA upstream 247266 26691381 ~ 26692888 (+) True LOC120546076
TU240870 lncRNA upstream 425192 26514526 ~ 26514962 (+) True G177937
TU240788 lncRNA upstream 528141 26336307 ~ 26412013 (+) False LOC120545651
TU241014 lncRNA downstream 99154 27065277 ~ 27065705 (+) False erbin
TU241021 lncRNA downstream 138655 27104778 ~ 27105030 (+) True G178045
TU241182 lncRNA downstream 505788 27471911 ~ 27513908 (+) True G178155
TU241195 lncRNA downstream 550700 27516823 ~ 27521956 (+) True G178166
TU241193 lncRNA downstream 551353 27517476 ~ 27524148 (+) False G178166
XM_039778981.1 mRNA upstream 9860 26727810 ~ 26930294 (+) True LOC120545040
XM_039780785.1 mRNA upstream 325195 26586647 ~ 26614959 (+) False LOC120546038
XM_039779803.1 mRNA upstream 353941 26566849 ~ 26586213 (+) False zgc:162472
XM_039780471.1 mRNA downstream 7632 26973755 ~ 26975385 (+) True LOC120545850
XM_039780512.1 mRNA downstream 11338 26977461 ~ 26979183 (+) True LOC120545882
XM_039780711.1 mRNA downstream 15033 26981156 ~ 26992779 (+) True trappc13
XM_039780713.1 mRNA downstream 15033 26981156 ~ 26992779 (+) False trappc13
XM_039780714.1 mRNA downstream 15033 26981156 ~ 26992779 (+) False trappc13
XR_005636776.1 other upstream 325195 26586647 ~ 26614959 (+) True LOC120546038
XR_005636774.1 other upstream 325195 26586647 ~ 26614959 (+) False LOC120546038
XR_005636775.1 other upstream 325195 26586647 ~ 26614959 (+) False LOC120546038
XR_005636777.1 other upstream 325195 26589511 ~ 26614959 (+) False LOC120546038
TU240757 other upstream 716556 26223115 ~ 26223598 (+) True G177848
TU241015 other downstream 44074 27010197 ~ 27011395 (+) False nln
XR_005636773.1 other downstream 690413 27656536 ~ 27697932 (+) False lhfpl2a
XR_005636601.1 other downstream 1614145 28580268 ~ 28588026 (+) False LOC120544907
TU241633 other downstream 1978384 28944507 ~ 28945444 (+) True G178506
TU241682 other downstream 2118826 29084949 ~ 29092326 (+) True G178529

Expression Profile