RNA id: TU241182


Basic Information

Item Value
RNA id TU241182
length 1283
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G178155
representative True

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 27471911 ~ 27513908 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

atttaaaaaataaaAGTTGACAGCGACAATGTTTtataaacaaacataaaatgtcTCACGTGTCATGATTTCGATGGTGTCACTGCAACATTTCTTCATAAGACAGTCCcgaaatgaaaacacaaaaaaggcaAGAAGCTCTATACAACGTCAGCATTTTAAAGTTgctcaaaacaaagaaagaaaattacACTATTTCAtctgttgcaaaaaaaaaattaaagatgGCATAGTCCTTTCTGTTTCAGGGGAAGATGAACTGGACATTGTTCTTGTGTGTAAAAGCATCAGTTcatgcacacacgcaagcacacacacacattccttctCCTCAGACTGGATTCTCTTCAGTCGGTTCAGTTCGTCCCGGGAGATGAAAGTGAAGGAGCACTGAAATTTTTACTTGTTTTGTGATTTCCACTTTCCCTCAACCTGGCTACTTCTTCTACTCAGTGATTTCCTACATTTCACAGAATGACAACACCCTGAGAACTTGCTTGGACTTGTTTTTCACTTTAACTGACAGGTGGACAGACCAGATGTGAGAGTAAGAGGTTCCAATtgagaaaaaattaaaatcacaCCCCTTACTCAATACACTGCATTACTTACTGTGGACTATTGAGTGCTTTCTGCGGCAAAGTTGGTAGCCTTTTCTCCCTGTATGACTGCAAACATTGGTATACAATTCTGCCCTTGCTCTTTGGCTCTGAGGGGCTGAAAACAAAAAACCTGGTGTTTTGATAGAATTAGTTCATCTTAAGTTTAAACTAAAATGTGGCTGTGCTGGAAATAGCTTGACACGGTCGTATAATTTACATTTGGCCAGTTATCTGCAGGCATTACAAAAATACGCCAAACAATAAAATGGGCCCAGGAATGCAAGGTGCATTAGCAATTAGCTGTATTAACAGTGTTTAAGTGTTCTGGAGTGGGTCGTTTTCTTTACACTTGTAGATTTGGGCAGTGGGTGAAGTTATGGGCTGGTAAAGGTTGATAAAAATGGCGTACCAGCCTCTCTAACAGAATAACTTTGTGTGGTAACAGAGAGAGCGCATCTAATGCGCTCCTTCCCCCAGCAGAGTATCATCCTTGTGGCCTCAGAGGCTTAGAGAGGGCTACTGCGATCGGTGATCAGTGGGTGTGGTAGCCAGCAGCGCTCATGCCAGCCTGGTTGGTCAGCACCGTCCCGTTGACTCCCTGCCCGGGCTCCACCATGCCCCCGTTGCTCACAGCGCCCACACCTGTCCATCCGGCACCAGCGTGTAAATGACTGTGACGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU241021 lncRNA upstream 366881 27104778 ~ 27105030 (+) True G178045
TU241014 lncRNA upstream 406206 27065277 ~ 27065705 (+) False erbin
TU240899 lncRNA upstream 725651 26727838 ~ 26746260 (+) False LOC120545040
XR_005636783.1 lncRNA upstream 779023 26691381 ~ 26692888 (+) True LOC120546076
TU240870 lncRNA upstream 956949 26514526 ~ 26514962 (+) True G177937
TU241195 lncRNA downstream 2915 27516823 ~ 27521956 (+) True G178166
TU241193 lncRNA downstream 3568 27517476 ~ 27524148 (+) False G178166
TU241237 lncRNA downstream 56645 27570553 ~ 27573678 (+) True G178198
TU241244 lncRNA downstream 93572 27607480 ~ 27608213 (+) True G178205
TU241251 lncRNA downstream 188951 27702859 ~ 27706063 (+) True G178210
XM_039779442.1 mRNA upstream 210309 27235532 ~ 27261602 (+) True pik3r1
XM_039779443.1 mRNA upstream 210311 27255651 ~ 27261600 (+) False pik3r1
XM_039779444.1 mRNA upstream 210311 27256994 ~ 27261600 (+) False pik3r1
XM_039780537.1 mRNA upstream 259770 27110753 ~ 27212141 (+) False mast4
XM_039780535.1 mRNA upstream 265747 27110753 ~ 27206164 (+) True mast4
XM_039779681.1 mRNA downstream 25532 27539440 ~ 27568109 (+) True LOC120545398
XM_039779682.1 mRNA downstream 25532 27539440 ~ 27568109 (+) False LOC120545398
XM_039779683.1 mRNA downstream 25533 27539441 ~ 27568109 (+) False LOC120545398
XM_039779685.1 mRNA downstream 25533 27539441 ~ 27562161 (+) False LOC120545398
XM_039779684.1 mRNA downstream 25535 27539443 ~ 27568109 (+) False LOC120545398
TU241015 other upstream 460516 27010197 ~ 27011395 (+) False nln
XR_005636776.1 other upstream 856952 26586647 ~ 26614959 (+) True LOC120546038
XR_005636773.1 other downstream 142628 27656536 ~ 27697932 (+) False lhfpl2a
XR_005636601.1 other downstream 1066360 28580268 ~ 28588026 (+) False LOC120544907
TU241633 other downstream 1430599 28944507 ~ 28945444 (+) True G178506
TU241682 other downstream 1571041 29084949 ~ 29092326 (+) True G178529
TU242100 other downstream 2228715 29742623 ~ 29744075 (+) True G178845

Expression Profile