RNA id: TU241237


Basic Information

Item Value
RNA id TU241237
length 3098
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G178198
representative True

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 27570553 ~ 27573678 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ccctcaataaaacttgaaaataaacgttaacatatataacagctgttacgtcagttctactttactacttgtgctcatttaaaatacaatcactcaatatttgtctttattattattactgtaaagtcttaatttagctgtagcctgcttttcccattaagtttgacttaacgttattttagactgaatctagcggTCAGCTAgtggttagccgaattagctgttagctaaactaacgttagcttcccggtggaggctagccataggctagcgtggaacagattgtgCAGGTCGtaaacagtattatcttgcgcatgtgcagaacggatcgtgcaggcagaatgGATCGTGTACAGACAGTACCCATAGATGGTTAGCTGATGGTTAGCCTGCTAGCTGCCGCCATACCAAATCCTAATGTGTTCATTACTGCCTCCTGTGGCCAGATGGCGGGAAACACCCACTGGTAACTTATGGTTGGTGAGAACTGCAGTTGTCGCATGGATGTATAATATtcaatagggctgcacaattaatctcAATTtcatcgaaatcgcaatatggactagtgcaatatccaaatatgcaatttttgcaatatttgttaaaggcaaaatatgtgtcaaacatttctgaattaagtattgtgaggctgcagagacgtcccggcctagaAATTGTATcttacagactaaagaaaaaaaatcttttggttctgatcctcgcaaaaaaatcaccaaaacaatcattccctccaatatcgtgcatcatattgcaatatcagtcaaaataatcgcaattaggcATTTTCCTCACATCTAATTCTAATTCAATAGCCATAAGAAGCAACAATGAGCACACGTTATTTCCCAcacatttgaaaaaagaaacttttACAGGCGACACAAAggtcagatttatttatcaacgctggtaggtggattttttaaatctttggacagagctaggctagctgttttgactctttatgctaagctaagctaatcgtcTGTAGCTTCCCAATTACTGCACAGACAAAAGTGGTATCTAATCTTCTCATCGAACTCTTGGTAAGAAATCTAATTAATGAATTAACCCCCCAAAAGTCTAACTATTCGTTTTAAATGTAGCCATGGCACTCAGTGCATGACTGCTTAAATACAGGAAAGTgtgtttcagttaaaaacaggTTTGACACACAAAGTAAGAAGAgaggtattaaaaaaaagaaaaaaaagaaaatcacacacgcacgcacaaaccaCTCCAGTAAGTGATAAGCTCGGAAAACAAATGTCTGAAGGCAGTGGAAAAAGAGAGACTCTCTCAGGTTAATAAAATgacagtaaaaataaatatgaacatGTGATCTGAATGTTGGTCAGGTCTGGAGAAACAGGGGGCTGCGTCTGTTACCAGCAGATGGCGATGAAGCCTCAGACTTCAGCTAACTAACTTCCATATGCTGCATGGAAAGGTTTCTGCATTATGTATCCAAACTACATAACCTCCACATGTGCAGTTAGTTATACGCGTGTGTTTAAATAGGGGGGAGTCCTCTTAAACATTTCCTCAGTATTATTTTAAAGACCCCATGAAACATCAATTAATCTGTAGGTTATTTTCTCAAGTAATCCATTAATCGTTTAGTCTACAAAATAGTGAAAGATGTTGAAGGGGATCATGTtatgtccaaccaacagtccaaaagatattaagagaaaagcagcaaattgtcACATTGGAGAATCTAAAACCAGAGAATGAGGACTTTAAAGAACGGATGGCTTAAATAATGTCAGATTAAATTCTCTGCTGAATCGTTCCAGCTCCAGTTCAAGTAGAGATCCATAAAATAGATTTTCATCATCTGTCTGAAACAcagccagctttttttttttcagtttccttttttgGTCATATGCTTTTGGGTCTTGAAGAGTAACTTAACGGTAATGAATCATCACAGGATGATCACAACGGAGGTCATTATTATTCATAACAGGGAATCCCTctttatatattaaaatattacatccatCCATTTCTCCATCTCAATCAGCCGATCACGGAAAACGACTAAAGCTAGATTCAAGTAATGGTTTAGATTtcaattggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatattttgtaatatatattatacaatACATTTAGCCAAAATACTGTCCTGGTTAAAATGGCATCCTTGGAGGAGGAAAAGCAGAGGATGCACAAGTCAACAGATGTTTCTTATGAATATTTATCTGAAAAACTACAGCGGTGTGTGCTAATATTTCCAGTGTTGGCATTTCCAAGTTTACTTTGCATTTCGGACCCAGCTGTGCCGAGCTTCTTACAGTCCGAGCCTGTGTGGGCTGCAGGTAAACGCTTTGTTTGCAAAACATACTAACATGAACTCTCTCGCTCCCAGCTACAGCATGTTGAACTTTCAAAGTTCAAGACTCTCGAAGTCTGGCATGAATACAGGAAATAAAGGATTAGGTCGCGCTCATTATTAGAATCATGTTCTAGATTGTGCAAttacatttcccatgatgctttgtgTGATGTACACAGGAAGTGTAATGTCATTAGAGCAAGTTTTGGCAAATTGGCACCATTGAAAAAAGTATGCCGAATTAGCGGTTAGCAGTTCCTGTTTGCAGTGTACCCATGGATGTACACACAACTATCACTGGATTACTTTCATACTGAAGAAAACTTAAAACATGATTATTATCAGGCTAGTTCTGCAGTTTTCTATGATTTCTAAGTCCGAGATGGACATCGGCGATACAGACATCCTCTGGAAGTTTAAGTCACACCGAGTCTAAACATATTGTACGTTGAAGCAAATTTCGGCAATCTGGCGCCAATTACCTCcatgagctgctgctgctgctgctgctcatgTTAAACTACAAGAATTAAAACTTCATGTTGTTTTTAGAACAGATTATGGAGATTGAATTTGAGTTATATATCCTTCCCCCAAAATCTTCTCCTCTTGTTATATTATACTTTACTCAGTATGCTGCATCTATTAATTATTTCTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU241193 lncRNA upstream 46405 27517476 ~ 27524148 (+) False G178166
TU241195 lncRNA upstream 48597 27516823 ~ 27521956 (+) True G178166
TU241182 lncRNA upstream 56645 27471911 ~ 27513908 (+) True G178155
TU241021 lncRNA upstream 465523 27104778 ~ 27105030 (+) True G178045
TU241014 lncRNA upstream 504848 27065277 ~ 27065705 (+) False erbin
TU241244 lncRNA downstream 33802 27607480 ~ 27608213 (+) True G178205
TU241251 lncRNA downstream 129181 27702859 ~ 27706063 (+) True G178210
TU241305 lncRNA downstream 239805 27813483 ~ 27813878 (+) True G178256
TU241315 lncRNA downstream 359140 27932818 ~ 27933019 (+) True G178266
TU241316 lncRNA downstream 365226 27938904 ~ 27939748 (+) True G178267
XM_039779681.1 mRNA upstream 2444 27539440 ~ 27568109 (+) True LOC120545398
XM_039779682.1 mRNA upstream 2444 27539440 ~ 27568109 (+) False LOC120545398
XM_039779683.1 mRNA upstream 2444 27539441 ~ 27568109 (+) False LOC120545398
XM_039779684.1 mRNA upstream 2444 27539443 ~ 27568109 (+) False LOC120545398
XM_039779685.1 mRNA upstream 8392 27539441 ~ 27562161 (+) False LOC120545398
XM_039779633.1 mRNA downstream 37124 27610802 ~ 27631081 (+) True dmgdh
XM_039780630.1 mRNA downstream 60059 27633737 ~ 27652089 (+) True arsb
XM_039780750.1 mRNA downstream 82858 27656536 ~ 27697932 (+) True lhfpl2a
XM_039780752.1 mRNA downstream 82858 27656536 ~ 27697932 (+) False lhfpl2a
XM_039780751.1 mRNA downstream 109021 27682699 ~ 27697932 (+) False lhfpl2a
TU241015 other upstream 559158 27010197 ~ 27011395 (+) False nln
XR_005636776.1 other upstream 955594 26586647 ~ 26614959 (+) True LOC120546038
XR_005636773.1 other downstream 82858 27656536 ~ 27697932 (+) False lhfpl2a
XR_005636601.1 other downstream 1006590 28580268 ~ 28588026 (+) False LOC120544907
TU241633 other downstream 1370829 28944507 ~ 28945444 (+) True G178506
TU241682 other downstream 1511271 29084949 ~ 29092326 (+) True G178529
TU242100 other downstream 2168945 29742623 ~ 29744075 (+) True G178845

Expression Profile