RNA id: XM_039779444.1


Basic Information

Item Value
RNA id XM_039779444.1
length 2095
RNA type mRNA
GC content 0.48
exon number 9
gene id pik3r1
representative False

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 27235532 ~ 27261602 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGCCGGACTAAACCTCCGCGCAACATATGCAGAGAGGAGGGGCTGAGCAACCTGCAGGAGAGCGAGCAGGCAAGctcgagagagagggagaggatgaCAGGAAAAGCATGGAAACAGGCTGCTGGTCCTTTTTTCTGCTAGTGGAGAGACGCTGCACATTTGCTTTTAAGATGGATGCATACTAGGATGAAATGCTGGATGCTGCAGAGAgaattatgcttattttttttttcgcaTAGTTGCAGTGTTGTAAAGAATTGAAGCAGGGAAGTAAAAGGTAATGGGCTTTCAGAATGACCTCATCACTCTAAGAAAATGAGAAATGCAGGAGTGGTTGGTGACAAACCCcccttgtgattggctgtgCTCTACCTCCAAAGCCACCCAAGCCCACACCTGTGACTAACAACGGTATGAACAACAACATGGCGCTACAAGACGCCGAATGGTACTGGGGAGACATCTCAAGGGAGGAGGTCAATGAGAAACTGAGGGACACTGCAGATGGTACGTTTTTGGTGCGAGACGCCTCTACAAAAATGCACGGAGACTACACTCTGACTCTGAGGAAAGGAGGAAACAACAAACTCATCAAGATATTCCATCGGGATGGGAAGTACGGCTTCTCAGACCCACTGACCTTCAGCTCAGTTGTTGAGCTCATCAACCACTATCGCAACGAGTCACTGGCTCAGTACAACCCCAAGCTAGACGTCAAGCTGCTGTATCCTGTCTCCAAACACCAGCAGGATCAGGTGGTGAAAGAAGACAACATTGAAGCGGTGGGGAGAAAGCTCTGTGAGTACCACCAGCAGTACCAGGAGAAGAACAAAGAGTACGACCGACTGTATGAAGAATACACCAGAACATCACAAgaaatccaaatgaaaaggaCCGCTATCGAGGCTTTTAatgaaactataaagatatttGAGGAGCAATGCCAAACACAAGAGCGGTACAGCAAGGAGTATATTGAGAAATTCAGGAGAGAAGGCAACGACAAGGAGATCCAGAGGATTATGGGCAACTACGAGAAGTTGAAGTCCCGGATTAGTGAAATCGTAGACAGCAAGCGGCGACTGGAGGAAGACTTGAAGAAACAGGCGGCAGACTACAGAGAGATCGACAAGAGGATGAACAGCATCAAGCCCGACCTCATCCAGCTCCGTAAGACCAGAGACCAGTATCTCATGTGGTTGACCCAGAAGGGAGTCCGACAGAAGAAACTCAACGAGTGGCTCGGAATCAAGAACGAGAACACAGAAGAtcAATATTCTATGGTGGACGATGATGAAGACCTTCCTCATCACGATGAGCGGTCCTGGAAACTAGGCAACATCAATCGACTACAGGCAGAAGCTCTCCTCCAGGGCAAGAGAGACGGAACATTCCTGGTTCGAGACAGCAGCAAAGCAGGATGCTACGCCTGCAGCGTTGTCGTGGACGGTGAGGTGAAGCACTGCGTCATCAATAAGACCCCCTCAGGTTATGGCTTTGCCGAGCCGTACAATCTGTACGGCTCATTGAAAGAACTCGTACTTCACTACCAGCACACGTCTTTGGTCCAGCACAATGACTCTCTGAATGTGACGCTAGCTTACCCGGTGTATACCCAGCAGAGACGGTGAGGACCTGGATGTTTCCACATGGACACAAAGAAAAGGCCTCATTGGGGAGTTGGAGATGTATGTCCTCAAACTCCATGATTTGAAAAAAGAGGCTGTTTGCCGGACTCAGACTTGAAATCGGAGGAAAGGACGCAATAAAGCCTGAAACATGTCAGTGACTTTGCCCAATCACGAGCCAGAGGCAAGTCTGAATGTAgatttatttctcttttacTTATTCTGGGAGCACAGAATGGAGCGAAAACTGCTGAACTCTCCCACAGAGGAGGACATTTGAGGCCTTTTCCTAATGGTGCTTGTTCCTTTTCAAAGCTTTACCAGCCGGGAATGTCTAATTGCAACAGAAACTCTTCAGATGGAACTTTACTCACCGGCCACAACTTTGTTTTTccaccttttttgttttattctttcacgtcacctgtgtgtgtgtgtgtgtgtgtgtgtgtgttttttttttattt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU241021 lncRNA upstream 151964 27104778 ~ 27105030 (+) True G178045
TU241014 lncRNA upstream 191289 27065277 ~ 27065705 (+) False erbin
TU240899 lncRNA upstream 510734 26727838 ~ 26746260 (+) False LOC120545040
XR_005636783.1 lncRNA upstream 564106 26691381 ~ 26692888 (+) True LOC120546076
TU240870 lncRNA upstream 742032 26514526 ~ 26514962 (+) True G177937
TU241182 lncRNA downstream 210311 27471911 ~ 27513908 (+) True G178155
TU241195 lncRNA downstream 255223 27516823 ~ 27521956 (+) True G178166
TU241193 lncRNA downstream 255876 27517476 ~ 27524148 (+) False G178166
TU241237 lncRNA downstream 308953 27570553 ~ 27573678 (+) True G178198
TU241244 lncRNA downstream 345880 27607480 ~ 27608213 (+) True G178205
XM_039780537.1 mRNA upstream 44853 27110753 ~ 27212141 (+) False mast4
XM_039780535.1 mRNA upstream 50830 27110753 ~ 27206164 (+) True mast4
XM_039780551.1 mRNA upstream 50830 27110753 ~ 27206164 (+) False mast4
XM_039780552.1 mRNA upstream 50830 27170672 ~ 27206164 (+) False mast4
XM_039780544.1 mRNA upstream 53948 27110753 ~ 27203046 (+) False mast4
XM_039779681.1 mRNA downstream 277840 27539440 ~ 27568109 (+) True LOC120545398
XM_039779682.1 mRNA downstream 277840 27539440 ~ 27568109 (+) False LOC120545398
XM_039779683.1 mRNA downstream 277841 27539441 ~ 27568109 (+) False LOC120545398
XM_039779685.1 mRNA downstream 277841 27539441 ~ 27562161 (+) False LOC120545398
XM_039779684.1 mRNA downstream 277843 27539443 ~ 27568109 (+) False LOC120545398
TU241015 other upstream 245599 27010197 ~ 27011395 (+) False nln
XR_005636776.1 other upstream 642035 26586647 ~ 26614959 (+) True LOC120546038
XR_005636773.1 other downstream 394936 27656536 ~ 27697932 (+) False lhfpl2a
XR_005636601.1 other downstream 1318668 28580268 ~ 28588026 (+) False LOC120544907
TU241633 other downstream 1682907 28944507 ~ 28945444 (+) True G178506
TU241682 other downstream 1823349 29084949 ~ 29092326 (+) True G178529
TU242100 other downstream 2481023 29742623 ~ 29744075 (+) True G178845

Expression Profile