RNA id: XM_039780471.1


Basic Information

Item Value
RNA id XM_039780471.1
length 928
RNA type mRNA
GC content 0.43
exon number 2
gene id LOC120545850
representative True

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 26973755 ~ 26975385 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ctaaccctgtttCGTGATTTTCGTGACAATAAAAATAACACCTTAAAACCTTAACACTTGAGACAATGACTGCAGGGCAAATTACTGTAACAGAAACACCTGGTTCAGACACAACTGTTTACTAAAACTGATAATTACCCTTTTTATAATGTTTAAGGATGTTGTTAATTAGTGTTATTGTTGTCTTGTCACTGACAAAAATGGGGGTAAAAGAGATGTTAGGTGTAATGGACACCTTTAAGCATTTTGAAGCaggtgcatatacagtatatttcccTACCCTAGCTGTGCTAAAGGTTTTTGCATATTATCAGACTTCCATAAGACACCAACTGCTGAAGTCAGGAGAACAGCCACAGTGCATTATTGTCACCTTGACTTTGGTGTCGCAGCAGCCTCAAGCAAGACCTGCAGTCCTGATCAATCGTAGCAGTCACTTCAGACATAACGAAATGGGAAATATCAACACTGCATGCCAGATGAGCAACTACAGCAAAAGGAACGTCCGAGTGTACATCACTGAGAAGGCTCTGGAGCTCGACAGCTTCATCGACTCCCATCCCGGAGAGGATGATAAGATCGTGAAGTTCACCTTCAAGAAGGACGTCAAGGACGTCAAGTACGTCCGTGTGCCGGTCTCTCAGACTCAGGAAGTGCACTGGGATGCTaatcactttctgtctgtcttcgtGGAGGATGAAAATGATGAAAACATTTATTCCAAGCAAATCATACACAACATGGCGCTGAGTGCTCCGATTACTGTGCTGCTCTATGATGTGTAGATTAACACCTTTTGCTCATGTGTTCATTACCGTCTGCTAGAGTGGGAGGTTGCATTACGTTGCTGACTCAAACAGGTCTGAATACTTTTTGCTGTCCACGTATCTCTCGTGATGCCACTAATAAAAAATTCTGCACAGCTTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU240899 lncRNA upstream 227495 26727838 ~ 26746260 (+) False LOC120545040
XR_005636783.1 lncRNA upstream 280867 26691381 ~ 26692888 (+) True LOC120546076
TU240870 lncRNA upstream 458793 26514526 ~ 26514962 (+) True G177937
TU240792 lncRNA upstream 600067 26369841 ~ 26373688 (+) True G177876
TU240790 lncRNA upstream 612483 26360394 ~ 26361272 (+) True G177874
TU241014 lncRNA downstream 89892 27065277 ~ 27065705 (+) False erbin
TU241021 lncRNA downstream 129393 27104778 ~ 27105030 (+) True G178045
TU241182 lncRNA downstream 496526 27471911 ~ 27513908 (+) True G178155
TU241195 lncRNA downstream 541438 27516823 ~ 27521956 (+) True G178166
TU241193 lncRNA downstream 542091 27517476 ~ 27524148 (+) False G178166
XM_039778982.1 mRNA upstream 7632 26940154 ~ 26966123 (+) True LOC120545041
XM_039778981.1 mRNA upstream 43461 26727810 ~ 26930294 (+) True LOC120545040
XM_039780785.1 mRNA upstream 358796 26586647 ~ 26614959 (+) False LOC120546038
XM_039779807.1 mRNA upstream 387542 26566849 ~ 26586213 (+) False zgc:162472
XM_039780512.1 mRNA downstream 2076 26977461 ~ 26979183 (+) True LOC120545882
XM_039780711.1 mRNA downstream 5771 26981156 ~ 26992779 (+) True trappc13
XM_039780713.1 mRNA downstream 5771 26981156 ~ 26992779 (+) False trappc13
XM_039780714.1 mRNA downstream 5771 26981156 ~ 26992779 (+) False trappc13
XM_039780715.1 mRNA downstream 5771 26981156 ~ 26992779 (+) False trappc13
XR_005636776.1 other upstream 358796 26586647 ~ 26614959 (+) True LOC120546038
XR_005636774.1 other upstream 358796 26586647 ~ 26614959 (+) False LOC120546038
XR_005636775.1 other upstream 358796 26586647 ~ 26614959 (+) False LOC120546038
XR_005636777.1 other upstream 358796 26589511 ~ 26614959 (+) False LOC120546038
TU240757 other upstream 750157 26223115 ~ 26223598 (+) True G177848
TU241015 other downstream 34812 27010197 ~ 27011395 (+) False nln
XR_005636773.1 other downstream 681151 27656536 ~ 27697932 (+) False lhfpl2a
XR_005636601.1 other downstream 1604883 28580268 ~ 28588026 (+) False LOC120544907
TU241633 other downstream 1969122 28944507 ~ 28945444 (+) True G178506
TU241682 other downstream 2109564 29084949 ~ 29092326 (+) True G178529

Expression Profile