RNA id: XM_039778877.1


Basic Information

Item Value
RNA id XM_039778877.1
length 1527
RNA type mRNA
GC content 0.45
exon number 7
gene id LOC120544969
representative True

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 27960326 ~ 27966434 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCTGCCCACACTTTCTCCACTCAGGTGCGCCTTGCAGACAGAGATGCGTGTTATGGAGCGCACTTTCCGAGAGCAGCTCTTCTTTCTggtgttgtgtctgtctgtactcAAGGGAGACTCCAGATATATAGAGaacAATGAGATCTCTAAAGatgaattattttcatttttcaactCGGAACTCAAGAGAGAAACACCTGAAGAGTTAATGTACCGACGACCTTTACGTTGTCTGGACATGGTTGCAGTGGAGGGTCAGTTCACCTTCACAGCAGAGCGCCCTCAGCTCAGCTGTGCTGCTTTCTTCATGGCAGAGCCCAACGAAGTGCTCACTGTGGATTATGACAATGTTGACATCGACTGCAGGGGAGGGGACTTAATCACGGTGTTTGACGGCTGGGTGATGAAAGGAGAGAAGTTCCCGAGCTCCCAGGATCACCCGCTGCCTCTGTACGAGCGCTATGTGGATTACTGTGACTCAGGATCAGTGAGGAGAAGCGTGCGCTCCTCTCAGAACGTGGCCATGGTCTTCTTCCGCATTCACAACACTGGCAGCAGCTTCACCCTGACAGTGAGGAAACACATCAATCCTTTCCCCTGTAATGTCATCTCCCAGTCACCAGAGGGCAGTTACACAATGGTGATCCCGCAGCAGCACAGGAACTGCAGCTTCTCCATCATCTATCCAGTGGCGATCGACGTCTCAGAGTTCAGCCTGGGACACTACAACAACTTTCCCAAGAGGTCCATGCCTGGTTGTGCAGAATCAGGAGATTTTGTGCAGCTGCTGGGAGGAAACGGCATCGACACATCCAAGCTGCTGCCCATCACAGACCTCTGCATCTCCTTCACTGGACCCACCCACATGAAGATCGGCTGTGATAACACAGTGGTGAGGATGGTGTCCAGCGGGAAATTTGTCAGCCGAGTGTCTTTCAGCTACAGGCTACTGGACAGCCAGGAACTGCAGACGATCAAACTCAACAACGTGGAGGATTTCTGTTTCAACAACTGATCCCAGCAAGATCATGAAGTGACAAATGATCATTTGACTGCAAACATTGTTTTTCTccaattattttattaaaaaaaaaacaaaaaaacaagagatCCACTTGGTCATTCCCAgactcgtttttatttttattctaacTGCATTTTGATTCTTTTATTTTCCACTCATTCTGGTCGTTGCTAAATATGAAGTGTCCTTTTGTGTTTGGTGGAACTgctattgtttttgtttctgctttgtgtacagtatgtgtatttaTTAAGACTTATGATATTATGTTACATATGAGTTCATGGCCAACATTCTTGAAAGAGAATGGTGCTGAAACGAATGTTACTGGTGTTTATTTTGCTGAATGATACACAATGTGCTGAGTCACATCCTGCCACAGATGACATAGAGGGCAATAGGTAAAGTGTTATCAATATAATAAATACAAGTGTTCATTGCCATTATGAAGTTAAATTTGTATAAAACCTTTTTGTAATAAAATTATACTGCATGACAAAGCA

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU241316 lncRNA upstream 20578 27938904 ~ 27939748 (+) True G178267
TU241315 lncRNA upstream 27307 27932818 ~ 27933019 (+) True G178266
TU241305 lncRNA upstream 146448 27813483 ~ 27813878 (+) True G178256
TU241251 lncRNA upstream 254263 27702859 ~ 27706063 (+) True G178210
TU241244 lncRNA upstream 352113 27607480 ~ 27608213 (+) True G178205
TU241421 lncRNA downstream 244725 28211159 ~ 28211592 (+) True G178348
XR_005636721.1 lncRNA downstream 555850 28522284 ~ 28524840 (+) True LOC120545668
TU241519 lncRNA downstream 555859 28522293 ~ 28524832 (+) False LOC120545668
TU241530 lncRNA downstream 586393 28552827 ~ 28553090 (+) False G178426
TU241531 lncRNA downstream 586393 28552827 ~ 28554101 (+) True G178426
XM_039779689.1 mRNA upstream 80246 27867658 ~ 27880080 (+) True wdr41
XM_039778922.1 mRNA upstream 105518 27849665 ~ 27854808 (+) True otpa
XM_039778923.1 mRNA upstream 105518 27849665 ~ 27854808 (+) False otpa
XM_039780363.1 mRNA upstream 116068 27829379 ~ 27844258 (+) True tbca
XM_039779591.1 mRNA upstream 176320 27720197 ~ 27784006 (+) False ap3b1a
XM_039780334.1 mRNA downstream 29403 27995837 ~ 27997659 (+) True ch25hl2
XM_039779853.1 mRNA downstream 87520 28053954 ~ 28058239 (+) True LOC120545491
XM_039779618.1 mRNA downstream 191387 28157821 ~ 28188857 (+) False LOC120545370
XM_039779616.1 mRNA downstream 191388 28157822 ~ 28188857 (+) True LOC120545370
XM_039779619.1 mRNA downstream 191388 28157822 ~ 28188857 (+) False LOC120545370
XR_005636773.1 other upstream 262394 27656536 ~ 27697932 (+) False lhfpl2a
TU241015 other upstream 948931 27010197 ~ 27011395 (+) False nln
XR_005636774.1 other upstream 1345367 26586647 ~ 26614959 (+) False LOC120546038
XR_005636601.1 other downstream 613834 28580268 ~ 28588026 (+) False LOC120544907
TU241633 other downstream 978073 28944507 ~ 28945444 (+) True G178506
TU241682 other downstream 1118515 29084949 ~ 29092326 (+) True G178529
TU242100 other downstream 1776189 29742623 ~ 29744075 (+) True G178845
TU242091 other downstream 1827710 29794144 ~ 29795314 (+) False LOC120545429

Expression Profile