denr (denr)


Basic Information

Item Value
gene id denr
gene name denr
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 28971400 ~ 28978927 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039778978.1
GCGTATCTGCCACTTCAACAACTAAAACAAGAAGCGCTACTAGGCGTGCTCAAAGTACGCCAACTAAACCTTATTCAATAAGAATGATTTTCTAAAAGTCAAACTAACGTTAATAATGCGAGCGGATTTACTGAACAGACATCAGTTTTAAGAATATATTTCGCGGGATAATTTGTGATGGCTACTACTGAGATGGAATCTGGTTCCTTGGAAAGCAGACCAGAACATAGGACAGTGGGCTCGAACTCAAATTACCCACTGAAAGTACTTTACTGTGGAGTGTGCTCTCTGCCTACTGAGTACTGTGAGTACATGCCTGAGCCAGCCAAATGTAGGGTTTGGCTTGAGAAGAACTTCCCAGATGTATTTGCCAGGATGACTGTAGGCCCGGCAGCAGATGCACCCAGCCAGGAGCTCGGCACTGGAGAAGCTCCCCCTGCAGGcgaggaggagaaaaagaaacagaggaGAGgtGGAAAAGGCCTGAtcaaacagaaaaagaagaCTCTGCCTCAGAAAGTCACGATAGCAAAAATCCCCCGAGCCAAGAAAAAATATGTCACAAGGGTGTGTGGCATGGCAACATTTGACATTGAACTTAAAGAGGCTCAGCGATTCTTCGCCCAGAAATTCTCTTGTGGTGCCTCGGTTACAGCAGAGGATGAAATCATCATTCAGGGAGATTTTACAGATGACATAATCGACGTCATTCAAGAGAAGTGGCCTGAGGTGGATGATGACAGCATCGATGATCTGGGTGAAGTCAAGAAGTGAAGACCAAATATGCACTTTTACTGAAATGGATGTGAcctgtaacaacaacaacaacaacaacctggcCAAATGTacacattaagtcattttataCCTATTTTATTTACTGTTCATAAAAAGCTGCGGACTTGGCCACTcacttggctttttttttttttagttaataGCTGCTTTCTCTCGTTTGCCAAAGGTGTGGTATGACGTGAATCCCTCCCAAATGTTCTTCACTCTAGCAAAACTGTAGGCTAATAAATTTCAGTCTCCTTCGCCTGTA
>XM_039778979.1
ATTCGACATTTGTTCTATCTTTATTCAGTTTATTCAGCAGCGTTCAGTTAGCGGTGCGTTAGCTTATTTAGCTAGCATGCTAAGCTAAAGCCCCAGTAAACTGAGGTGCTAACGGTGACAGCTGGGTGAGATAATTTGTGATGGCTACTACTGAGATGGAATCTGGTTCCTTGGAAAGCAGACCAGAACATAGGACAGTGGGCTCGAACTCAAATTACCCACTGAAAGTACTTTACTGTGGAGTGTGCTCTCTGCCTACTGAGTACTGTGAGTACATGCCTGAGCCAGCCAAATGTAGGGTTTGGCTTGAGAAGAACTTCCCAGATGTATTTGCCAGGATGACTGTAGGCCCGGCAGCAGATGCACCCAGCCAGGAGCTCGGCACTGGAGAAGCTCCCCCTGCAGGcgaggaggagaaaaagaaacagaggaGAGgtGGAAAAGGCCTGAtcaaacagaaaaagaagaCTCTGCCTCAGAAAGTCACGATAGCAAAAATCCCCCGAGCCAAGAAAAAATATGTCACAAGGGTGTGTGGCATGGCAACATTTGACATTGAACTTAAAGAGGCTCAGCGATTCTTCGCCCAGAAATTCTCTTGTGGTGCCTCGGTTACAGCAGAGGATGAAATCATCATTCAGGGAGATTTTACAGATGACATAATCGACGTCATTCAAGAGAAGTGGCCTGAGGTGGATGATGACAGCATCGATGATCTGGGTGAAGTCAAGAAGTGAAGACCAAATATGCACTTTTACTGAAATGGATGTGAcctgtaacaacaacaacaacaacaacctggcCAAATGTacacattaagtcattttataCCTATTTTATTTACTGTTCATAAAAAGCTGCGGACTTGGCCACTcacttggctttttttttttttagttaataGCTGCTTTCTCTCGTTTGCCAAAGGTGTGGTATGACGTGAATCCCTCCCAAATGTTCTTCACTCTAGCAAAACTGTAGGCTAATAAATTTCAGTCTCCTTCGCCTGTA
>XM_039778980.1
GGATATTTTTTACAGCAAGATAATTTGTGATGGCTACTACTGAGATGGAATCTGGTTCCTTGGAAAGCAGACCAGAACATAGGACAGTGGGCTCGAACTCAAATTACCCACTGAAAGTACTTTACTGTGGAGTGTGCTCTCTGCCTACTGAGTACTGTGAGTACATGCCTGAGCCAGCCAAATGTAGGGTTTGGCTTGAGAAGAACTTCCCAGATGTATTTGCCAGGATGACTGTAGGCCCGGCAGCAGATGCACCCAGCCAGGAGCTCGGCACTGGAGAAGCTCCCCCTGCAGGcgaggaggagaaaaagaaacagaggaGAGgtGGAAAAGGCCTGAtcaaacagaaaaagaagaCTCTGCCTCAGAAAGTCACGATAGCAAAAATCCCCCGAGCCAAGAAAAAATATGTCACAAGGGTGTGTGGCATGGCAACATTTGACATTGAACTTAAAGAGGCTCAGCGATTCTTCGCCCAGAAATTCTCTTGTGGTGCCTCGGTTACAGCAGAGGATGAAATCATCATTCAGGGAGATTTTACAGATGACATAATCGACGTCATTCAAGAGAAGTGGCCTGAGGTGGATGATGACAGCATCGATGATCTGGGTGAAGTCAAGAAGTGAAGACCAAATATGCACTTTTACTGAAATGGATGTGAcctgtaacaacaacaacaacaacaacctggcCAAATGTacacattaagtcattttataCCTATTTTATTTACTGTTCATAAAAAGCTGCGGACTTGGCCACTcacttggctttttttttttttagttaataGCTGCTTTCTCTCGTTTGCCAAAGGTGTGGTATGACGTGAATCCCTCCCAAATGTTCTTCACTCTAGCAAAACTGTAGGCTAATAAATTTCAGTCTCCTTCGCCTGTA

Function

symbol description
denr Predicted to enable mRNA binding activity. Predicted to be involved in formation of translation preinitiation complex and translation reinitiation. Predicted to act upstream of or within translational initiation. Is expressed in midbrain; myotome; optic vesicle; and retina. Orthologous to human DENR (density regulated re-initiation and release factor).

NR:

description
PREDICTED: density-regulated protein

GO:

id name namespace
GO:0006413 translational initiation biological_process
GO:0003743 translation initiation factor activity molecular_function

KEGG:

id description
K24272 DENR, TMA22; density-regulated protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039778978.1 True 1048 mRNA 0.44 8 28971400 28978927
XM_039778979.1 False 1011 mRNA 0.45 8 28971574 28978927
XM_039778980.1 False 900 mRNA 0.44 8 28971968 28978927

Neighbor

gene id symbol gene type direction distance location
kmt5aa LOC104947636,LOC103369788,LOC104940038 coding upstream 67081 28897490 ~ 28904319 (+)
LOC120546066 LOC103369939,LOC102300272,LOC101486468,LOC102201162 coding upstream 202997 28754208 ~ 28768403 (+)
zswim6 LOC103369940,LOC100698789 coding upstream 253150 28670320 ~ 28718250 (+)
LOC120544911 NA coding upstream 339571 28608809 ~ 28631829 (+)
mat2al LOC103371477,LOC108250364,LOC100699062,LOC102202437,LOC101466580,LOC102780929 coding upstream 363518 28595400 ~ 28607882 (+)
LOC120545038 denr,LOC100690406,LOC101472698,LOC103375039,LOC102800030 coding downstream 101 28979028 ~ 28981370 (+)
clip1b LOC103361300 coding downstream 2550 28981477 ~ 29018771 (+)
eif2b1 eif2b1 coding downstream 58142 29037069 ~ 29045131 (+)
rph3aa LOC104964590,LOC107086068,LOC102797992,LOC103361309 coding downstream 129289 29108216 ~ 29159101 (+)
pla2g3 NA coding downstream 185305 29164232 ~ 29176814 (+)
G178491 NA non-coding upstream 63029 28904473 ~ 28908371 (+)
G178468 NA non-coding upstream 122517 28846471 ~ 28848883 (+)
G178460 NA non-coding upstream 139070 28828109 ~ 28832330 (+)
G178441 NA non-coding upstream 269994 28658485 ~ 28701406 (+)
G178439 NA non-coding upstream 330532 28640288 ~ 28640868 (+)
G178521 NA non-coding downstream 52588 29031515 ~ 29032362 (+)
G178710 NA non-coding downstream 466126 29445053 ~ 29458536 (+)
G178725 NA non-coding downstream 549498 29528425 ~ 29531359 (+)
G178728 NA non-coding downstream 565232 29544159 ~ 29544741 (+)
G178835 LOC104948034,LOC103371291,LOC107101750,LOC105915605 non-coding downstream 713511 29692438 ~ 29701839 (+)
G178506 NA other upstream 25956 28944507 ~ 28945444 (+)
LOC120544907 hnrnpd,LOC104960871 other upstream 383368 28580268 ~ 28588032 (+)
LOC120545218 NA other upstream 399005 28567146 ~ 28572395 (+)
lhfpl2a lhfpl2,LOC101175333 other upstream 1273468 27656536 ~ 27697932 (+)
erbin erbin other upstream 1905694 27012889 ~ 27065706 (+)
ptpn11a ptpn11 other downstream 27694 29006621 ~ 29083011 (+)
G178529 NA other downstream 106022 29084949 ~ 29092326 (+)
rasgrf2a NA other downstream 622604 29601531 ~ 29667231 (+)
G178845 NA other downstream 763696 29742623 ~ 29750295 (+)
LOC120545429 LOC104948058 other downstream 814877 29793804 ~ 29795825 (+)

Expression


Co-expression Network