RNA id: XM_039778980.1


Basic Information

Item Value
RNA id XM_039778980.1
length 900
RNA type mRNA
GC content 0.44
exon number 8
gene id denr
representative False

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 28971400 ~ 28978927 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGATATTTTTTACAGCAAGATAATTTGTGATGGCTACTACTGAGATGGAATCTGGTTCCTTGGAAAGCAGACCAGAACATAGGACAGTGGGCTCGAACTCAAATTACCCACTGAAAGTACTTTACTGTGGAGTGTGCTCTCTGCCTACTGAGTACTGTGAGTACATGCCTGAGCCAGCCAAATGTAGGGTTTGGCTTGAGAAGAACTTCCCAGATGTATTTGCCAGGATGACTGTAGGCCCGGCAGCAGATGCACCCAGCCAGGAGCTCGGCACTGGAGAAGCTCCCCCTGCAGGcgaggaggagaaaaagaaacagaggaGAGgtGGAAAAGGCCTGAtcaaacagaaaaagaagaCTCTGCCTCAGAAAGTCACGATAGCAAAAATCCCCCGAGCCAAGAAAAAATATGTCACAAGGGTGTGTGGCATGGCAACATTTGACATTGAACTTAAAGAGGCTCAGCGATTCTTCGCCCAGAAATTCTCTTGTGGTGCCTCGGTTACAGCAGAGGATGAAATCATCATTCAGGGAGATTTTACAGATGACATAATCGACGTCATTCAAGAGAAGTGGCCTGAGGTGGATGATGACAGCATCGATGATCTGGGTGAAGTCAAGAAGTGAAGACCAAATATGCACTTTTACTGAAATGGATGTGAcctgtaacaacaacaacaacaacaacctggcCAAATGTacacattaagtcattttataCCTATTTTATTTACTGTTCATAAAAAGCTGCGGACTTGGCCACTcacttggctttttttttttttagttaataGCTGCTTTCTCTCGTTTGCCAAAGGTGTGGTATGACGTGAATCCCTCCCAAATGTTCTTCACTCTAGCAAAACTGTAGGCTAATAAATTTCAGTCTCCTTCGCCTGTA

Function

GO:

id name namespace
GO:0006413 translational initiation biological_process
GO:0003743 translation initiation factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU241643 lncRNA upstream 26524 28944507 ~ 28945444 (+) False G178506
TU241615 lncRNA upstream 63597 28904473 ~ 28908371 (+) True G178491
TU241588 lncRNA upstream 123085 28846471 ~ 28848883 (+) True G178468
TU241578 lncRNA upstream 139638 28828109 ~ 28832330 (+) False G178460
TU241663 lncRNA downstream 27694 29006621 ~ 29083011 (+) False ptpn11a
TU241671 lncRNA downstream 52588 29031515 ~ 29032362 (+) True G178521
TU241662 lncRNA downstream 81693 29060620 ~ 29082182 (+) False ptpn11a
TU241920 lncRNA downstream 466126 29445053 ~ 29458536 (+) True G178710
TU241945 lncRNA downstream 549498 29528425 ~ 29531359 (+) True G178725
XM_039779115.1 mRNA upstream 67649 28897490 ~ 28904319 (+) True kmt5aa
XM_039780825.1 mRNA upstream 203565 28754208 ~ 28768403 (+) True LOC120546066
XM_039779937.1 mRNA upstream 253718 28670320 ~ 28718250 (+) True zswim6
XM_039778781.1 mRNA upstream 340139 28613034 ~ 28631829 (+) False LOC120544911
XM_039778976.1 mRNA downstream 101 28979028 ~ 28981370 (+) True LOC120545038
XM_039778974.1 mRNA downstream 2550 28981477 ~ 29018771 (+) True clip1b
XM_039778973.1 mRNA downstream 2550 28981477 ~ 29018771 (+) False clip1b
XM_039778975.1 mRNA downstream 2550 28981477 ~ 29018771 (+) False clip1b
XM_039780303.1 mRNA downstream 58142 29037069 ~ 29045131 (+) True eif2b1
TU241633 other upstream 26524 28944507 ~ 28945444 (+) True G178506
XR_005636601.1 other upstream 383942 28580268 ~ 28588026 (+) False LOC120544907
XR_005636773.1 other upstream 1274036 27656536 ~ 27697932 (+) False lhfpl2a
TU241015 other upstream 1960573 27010197 ~ 27011395 (+) False nln
XR_005636777.1 other upstream 2357009 26589511 ~ 26614959 (+) False LOC120546038
TU241682 other downstream 106022 29084949 ~ 29092326 (+) True G178529
TU242100 other downstream 763696 29742623 ~ 29744075 (+) True G178845
TU242091 other downstream 815217 29794144 ~ 29795314 (+) False LOC120545429
TU242148 other downstream 1042392 30021319 ~ 30022217 (+) True G178881
TU242149 other downstream 1042392 30021319 ~ 30022217 (+) False G178881

Expression Profile