RNA id: XM_039779115.1


Basic Information

Item Value
RNA id XM_039779115.1
length 1272
RNA type mRNA
GC content 0.52
exon number 7
gene id kmt5aa
representative True

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 28897490 ~ 28904319 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTCCGTCTACATCATTTACATGAAGAAAAATGGCGGAGAGGAGCTGTGGAGGCTGCATCGGTTGAGCTGCTGGCAGTTTAAACAACAACAGCGGGGCACACGGTCACCCTGGATCGGGGCCGGAGTGTACGGAGGGCACTGCCGTACGAGCAGGGCGAGGATAATCTCTGAACCGGCGGACACATTCGCTCATTCTTTGTCCTGGAAACGAGAGAGCCGAGCGGAGAGCCACGAAAACAAGTCGGACATGAACGGGGAGATTGTATGCAATAGCCAATCAGTCACTGTCTTAAGCTGCACAAACTCCATATCACCAGTTCACGATGAAATCAAGCTGACACAGCAGGGACGGTGCTCTCCAATATGCTTCCAGCAAAATAATGCTCAGAGGCAGGGAGAGGGCAGGAGAACAAACCCCATCAGCACTACACCGAAACACTCCAAGACTAGTTTCCCGGAGATGGAGAGCAGCTACAGCCAGTGTTCACCCTGCTGGTCAGATGATCAGCCATCGCCTCCGCAGCTCCACTGCGCTCAGAACTGCCTTCGTTCCCCCACCGAACTCCCCCTGCGCGACAGCTTTTCTCACGCTCCCCTCCTCGCCGCCAACAACAACGGCAGCACTCTTCACAGCCACCAGAGGAGAGGCGTCCGCCTCAAACCCAAAGGAAAGAAATCCACAATAAGAATTGCAGGCGGAAAAAACTCCCAAAACCGAAAAGTTACCGACTACTACCCAATAAGAAGAAGCTCaagaaaaagtaaaacagaGATTGAGTGTGAAGAAAAGAAGCTCATAGATGATCTCATCACAAAGGGAATAGAAGAAGGAATGGAGGTGCAGCACATAGAAGGAAAGGGGAGAGCAGTGTTCGCCACGCGGTGTTTCCAGAAAGGCGAGTACGTGGTGGAGTACCACGGAGACCTGCTGCAGATCACCGACGCCAAAAAGAGGGAGGCTGAATACGCTCTCAACCCTGCCACTGGCTGCTACATGTACTACTTCCAGTACCTCTGCAAAACTTACTGTGTGGACGCAACAAAAGAGACTGGTCGAATGGGTAGGTTGATAAATCACAGTAAAACCGGAAACTGCCAAACCAAACTCCACGACATCAACGGGGTCCCTCACCTCATCCTCGTCGCCTCTCGAGACATCGACGAAGGCGAGGAGTTGCTCTATGACTACGGAGACCGCAGCAAAGCCTCCATCGCAGCTCACCCGTGGCTCAAATATTGATCCTTCGAGaatgaatgagaaaaaaaaagaaa

Function

GO: NA

KEGG:

id description
K11428 SETD8; [histone H4]-lysine20 N-methyltransferase SETD8

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU241588 lncRNA upstream 48607 28846471 ~ 28848883 (+) True G178468
TU241578 lncRNA upstream 65160 28828109 ~ 28832330 (+) False G178460
TU241577 lncRNA upstream 65160 28831279 ~ 28832330 (+) True G178460
TU241556 lncRNA upstream 196084 28658485 ~ 28701406 (+) True G178441
TU241554 lncRNA upstream 256622 28640288 ~ 28640868 (+) True G178439
TU241615 lncRNA downstream 154 28904473 ~ 28908371 (+) True G178491
TU241643 lncRNA downstream 40188 28944507 ~ 28945444 (+) False G178506
TU241663 lncRNA downstream 102302 29006621 ~ 29083011 (+) False ptpn11a
TU241671 lncRNA downstream 127196 29031515 ~ 29032362 (+) True G178521
TU241662 lncRNA downstream 156301 29060620 ~ 29082182 (+) False ptpn11a
XM_039780825.1 mRNA upstream 129087 28754208 ~ 28768403 (+) True LOC120546066
XM_039779937.1 mRNA upstream 179240 28670320 ~ 28718250 (+) True zswim6
XM_039778783.1 mRNA upstream 265661 28608809 ~ 28631829 (+) True LOC120544911
XM_039778978.1 mRNA downstream 67081 28971400 ~ 28978927 (+) True denr
XM_039778979.1 mRNA downstream 67255 28971574 ~ 28978927 (+) False denr
XM_039778980.1 mRNA downstream 67649 28971968 ~ 28978927 (+) False denr
XM_039778976.1 mRNA downstream 74709 28979028 ~ 28981370 (+) True LOC120545038
XM_039778974.1 mRNA downstream 77158 28981477 ~ 29018771 (+) True clip1b
XR_005636601.1 other upstream 309464 28580268 ~ 28588026 (+) False LOC120544907
XR_005636773.1 other upstream 1199558 27656536 ~ 27697932 (+) False lhfpl2a
TU241015 other upstream 1886095 27010197 ~ 27011395 (+) False nln
XR_005636775.1 other upstream 2282531 26586647 ~ 26614959 (+) False LOC120546038
TU241633 other downstream 40188 28944507 ~ 28945444 (+) True G178506
TU241682 other downstream 180630 29084949 ~ 29092326 (+) True G178529
TU242100 other downstream 838304 29742623 ~ 29744075 (+) True G178845
TU242091 other downstream 889825 29794144 ~ 29795314 (+) False LOC120545429
TU242148 other downstream 1117000 30021319 ~ 30022217 (+) True G178881

Expression Profile