RNA id: TU241920


Basic Information

Item Value
RNA id TU241920
length 1570
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G178710
representative True

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 29445053 ~ 29458536 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tatttttaaattttctttattattagAATTCCCTTAAGTGACATTGGAAGAAAAAATGAGGTACTGTGCCTATGAGACAAAGAAAAATGAGATTTATAATCATGACACGAtgagattgaaaaaaaaaaaaaagaaaactacatTTTGATGTATGATTACCGAGGAgggggaaagaaaagaaataagatAGTCAGACACCAGACCTTTTACATATTCCTATGAAGTGTTTTGACCGGAGACACTTGGGAGGACAAACTGTATTTTATGTACATATCTGAGGAGTGTAGGTTGTATTCGACAAAGAGAGCGCTGACAGCAACGAGtgcagtccccccccccctcccgagCAACATGAGCAAACATCTGGCCATCAAGCATACATCAGCCTGAGCCACTGAACGGCTGAGATAACCTACGAGAGATGCAAAAATGATCCTCCCTTTTATACTTTGTGACCGCTGTGCCGAGACAGATAGATGAAAACAATATTGTAGAAATGCAAACTAACTACGCACGCTACCGGAAGATTCCACCACATTGATTTCACCTACCGAAAGTCACGAAGGATTAAAAGATCACTCAGGAGCATCTTTCACTGTCCCTGTAAAGCAGTTTAAAATATGTCTTTAATATGTCTATAAGTCTTTACCGCTCAACTTAAAACCCACCTCGATATTCCAGTCATTCGTTCATGAAATGGGCTGTAACAGAACATTTACATGGATTCAATAGTCCAAAGATTGCAACAATACAGCCAAAAGGGCTCAAACTGATAAATAACAAAAGAGAAAACTcccattatatattttttttaaccaagcaAACAAGCTTTTAGCTCTGCATCTGCACTTTTTCATCCTTGCATGCTTTTAACGAAGGCGGGAACAACCGAATACAGAGGCTACACATTTACACCGACGACTACTTCATCCAAAAGACCTACGGGGAAATAAATAGTTTCATTCCAATGACCGTAAAACCTGCTAATAATCCACCGCTATGCGCCGCCGTCAGTTTTAGGACCAACAAGCTCACGGCTCCTCTCGGAGGTCGATGCTGAGGCTCGACTGTTACTGTCAGAGATTCTCATGAAACGTGTGAACAGGTGGGAGGAAGtgtgagggaggggagggggtccAGAGAGAAGACACATGAAGGTGGTGGTGGGGCGGAGGAGTGTGTTGGGATGTGGTTtgggtcttttcttttctttgttctcTCCTCCTTTACGCCTCCAGCTCGAAGCCCATCCCGACTTTGTGTCCGCCGGCGTTGAAGTTCTTCCCGTCGACCAGGGCCGAGAGGGTGACCTTCACGCCTGCAGCCAAAAGgcttgcaatACACCAGGGGACCCTGGAAGGGAACACGGTGTTCCTTTAGAGGCTGCTGGGATGCTAACAACATATGAGCTCTGCGTCCGGCTGAACCAAGAAGCTAATGGTACACATTAAGAGTCAAGCACCCGGAAATATGAATCTAACCTTGTATATGAGCACAAAGAATTACATTTCATAGCTAATGTACCAAGTCTTATAGATTATTTGAAATGTTATACTGTTGTACTATCCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU241663 lncRNA upstream 362042 29006621 ~ 29083011 (+) False ptpn11a
TU241662 lncRNA upstream 362871 29060620 ~ 29082182 (+) False ptpn11a
TU241671 lncRNA upstream 412691 29031515 ~ 29032362 (+) True G178521
TU241643 lncRNA upstream 499609 28944507 ~ 28945444 (+) False G178506
TU241615 lncRNA upstream 536682 28904473 ~ 28908371 (+) True G178491
TU241945 lncRNA downstream 69889 29528425 ~ 29531359 (+) True G178725
TU241959 lncRNA downstream 85623 29544159 ~ 29544741 (+) True G178728
TU241973 lncRNA downstream 208242 29666778 ~ 29667208 (+) False rasgrf2a
TU242082 lncRNA downstream 233902 29692438 ~ 29701839 (+) True G178835
TU242097 lncRNA downstream 284087 29742623 ~ 29750295 (+) False G178845
XM_039780823.1 mRNA upstream 4017 29430110 ~ 29441036 (+) True tor4aa
XM_039780824.1 mRNA upstream 4017 29430110 ~ 29441036 (+) False tor4aa
XM_039780743.1 mRNA upstream 16871 29412197 ~ 29428182 (+) True LOC120546010
XM_039780171.1 mRNA upstream 33516 29377691 ~ 29411537 (+) True naa25
XM_039780172.1 mRNA upstream 33516 29388176 ~ 29411537 (+) False naa25
XM_039780592.1 mRNA downstream 1973 29460509 ~ 29472975 (+) True slc25a1b
XM_039779843.1 mRNA downstream 16029 29474565 ~ 29527472 (+) True pi4kaa
XM_039780214.1 mRNA downstream 77259 29535795 ~ 29547893 (+) False marveld2a
XM_039780215.1 mRNA downstream 77259 29535795 ~ 29547893 (+) False marveld2a
XM_039780217.1 mRNA downstream 77260 29535796 ~ 29548022 (+) False marveld2a
TU241682 other upstream 352727 29084949 ~ 29092326 (+) True G178529
TU241633 other upstream 499609 28944507 ~ 28945444 (+) True G178506
XR_005636601.1 other upstream 857027 28580268 ~ 28588026 (+) False LOC120544907
XR_005636773.1 other upstream 1747121 27656536 ~ 27697932 (+) False lhfpl2a
TU241015 other upstream 2433658 27010197 ~ 27011395 (+) False nln
TU242100 other downstream 284087 29742623 ~ 29744075 (+) True G178845
TU242091 other downstream 335608 29794144 ~ 29795314 (+) False LOC120545429
TU242148 other downstream 562783 30021319 ~ 30022217 (+) True G178881
TU242149 other downstream 562783 30021319 ~ 30022217 (+) False G178881
XR_005636691.1 other downstream 805847 30264383 ~ 30310894 (+) True zmiz2

Expression Profile