RNA id: TU241959


Basic Information

Item Value
RNA id TU241959
length 351
lncRNA type intronic
GC content 0.49
exon number 2
gene id G178728
representative True

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 29544159 ~ 29544741 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gtgagacatctcacttctgttccatctttgttgggagtcgcacatgctcagtacctaggtaaggactactagccagtcagaagcagagtatgagggtgtgccctgacagtacctaggtaaggactactagccagtcagaagcagagtatgagggcgtgccctgacagtacctaggtaagaactactagccagtcagaagcagagtttgagggcgagcattataacatgtgttccaaagtgaccatgtctgtctctgaagtaaaggctggactacaatagagctgtttggagcagttggtgaacagtgttttctgttggagatggtaagtccctttgggggggactttgggc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU241945 lncRNA upstream 12800 29528425 ~ 29531359 (+) True G178725
TU241920 lncRNA upstream 85623 29445053 ~ 29458536 (+) True G178710
TU241663 lncRNA upstream 461148 29006621 ~ 29083011 (+) False ptpn11a
TU241662 lncRNA upstream 461977 29060620 ~ 29082182 (+) False ptpn11a
TU241671 lncRNA upstream 511797 29031515 ~ 29032362 (+) True G178521
TU241973 lncRNA downstream 122037 29666778 ~ 29667208 (+) False rasgrf2a
TU242082 lncRNA downstream 147697 29692438 ~ 29701839 (+) True G178835
TU242097 lncRNA downstream 197882 29742623 ~ 29750295 (+) False G178845
TU242102 lncRNA downstream 197882 29742623 ~ 29743330 (+) False G178845
TU242103 lncRNA downstream 197882 29742623 ~ 29743330 (+) False G178845
XM_039779843.1 mRNA upstream 16687 29474565 ~ 29527472 (+) True pi4kaa
XM_039780592.1 mRNA upstream 71184 29460509 ~ 29472975 (+) True slc25a1b
XM_039780823.1 mRNA upstream 103123 29430110 ~ 29441036 (+) True tor4aa
XM_039780824.1 mRNA upstream 103123 29430110 ~ 29441036 (+) False tor4aa
XM_039780743.1 mRNA upstream 115977 29412197 ~ 29428182 (+) True LOC120546010
XM_039780776.1 mRNA downstream 8617 29553358 ~ 29568249 (+) True oclna
XM_039778902.1 mRNA downstream 39302 29584043 ~ 29587640 (+) True LOC120544985
XM_039779058.1 mRNA downstream 56790 29601531 ~ 29667231 (+) True rasgrf2a
XM_039779724.1 mRNA downstream 124831 29669572 ~ 29690308 (+) True ckmt2a
XM_039779725.1 mRNA downstream 124831 29669572 ~ 29690308 (+) False ckmt2a
TU241682 other upstream 451833 29084949 ~ 29092326 (+) True G178529
TU241633 other upstream 598715 28944507 ~ 28945444 (+) True G178506
XR_005636601.1 other upstream 956133 28580268 ~ 28588026 (+) False LOC120544907
XR_005636773.1 other upstream 1846227 27656536 ~ 27697932 (+) False lhfpl2a
TU241015 other upstream 2532764 27010197 ~ 27011395 (+) False nln
TU242100 other downstream 197882 29742623 ~ 29744075 (+) True G178845
TU242091 other downstream 249403 29794144 ~ 29795314 (+) False LOC120545429
TU242148 other downstream 476578 30021319 ~ 30022217 (+) True G178881
TU242149 other downstream 476578 30021319 ~ 30022217 (+) False G178881
XR_005636691.1 other downstream 719642 30264383 ~ 30310894 (+) True zmiz2

Expression Profile