oclna (LOC103389949,LOC103373407)


Basic Information

Item Value
gene id oclna
gene name LOC103389949,LOC103373407
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 29553358 ~ 29568249 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039780776.1
agggggcggggcttaacttACCGAGAGCAGCCGCGCTCACCAAGGTGTGGCCTGGATTGTTTTTATCAGCAGCAGTAGTTTCAGTTGAGACATTTGAGGTGCAGCAGGGACAAAGAGACAGATTCTTCTCACAGAGCAGCACCCAGTGGATCGGCGATCATGTCCTCCAGACCCAATGGGAGTCCACCTCCCTACGACTCGGATACCAGAGATTACATCCCCCCCCAGCCGGCCTATTCCTACTACCCAGATGACGAGTTCCAGCATTTCTACCGCTGGTCGTCTCCGCCAGGCATCCTTAAAATCATGTCCATCATCTGCATCGTACTGAGCGTTGGCATATTCGCGTGCGTCGCGTCCACGCTGGCCTGGGACGTCCAGGGAGCTATGGACGGCTTCGGCGGCTACGGCTACGGAGGCTACGGGGGAACCGGGTACGGCGGCGGCAACTCGTATGGCAGCTTCGGTGGCGGCGCATACGGAGCTGGAAACAGCTACGGCTACGGCGGGATCGGAGGGAACTACTACGACCCCAGAAAGAGCAAAGGCTTTATCATCTTCATGGCGGCCGCCACCTTCATCGCCTGTCTGaccatcttcatcatcatcgtGTCTCATCAGAGCCTAACTGACAGCAGGCGGTTCTACCTGGCGGTGATCATCATCTGCGCCATCCTAGCGGTGCTAATGCTAATAGCGTCCATAGTGTACTTGGTGGCGGTGAACCCCATGGCTCAGTCCTACGGATCGACCTTCGGCATGCAGATCGCCGGTCTGTGTTCTCAGTACCAAGGGCCGCAGCAGTCAGGACTTCTAGTCAATCAGTACCTCTACCACTACTGCGTCCTGGAGCCACAAGAGGCCATCGCGGCGGTGTTCGGCTTCCTGGTCGGCGTCGCTCTCATCATCATGCTCGTCTTCGCGCTGAAGACTCGCCAGGGAATCCAAAACTTCGGCAAGAGCAACATTTTGTGGAAAAAGGTGAAGGTCCTCAACGAGATGGAGCCACCTCCAGACGTGGAGGCGTGGGTGAACAATGTGTCCCACGGTCCTGAAGTGCTGCCGATGGGCTACCCTGAGAAGATGAGAGGCTCCAGGAGTAACCTGGATGACGAAAGCAGCAACTACGACAAACCCCCCTACGTCTACACCCCACAGCCTTCAGTGGAAGGAAACCTGCCCTCGCAGAACGGGGATCCCTACAGGTCTTACTCAGACGTGCCCAGCTCGGCGGGAAAGCCCAAAAAGAGACGCACGCCCCGACCGCGTCAGGACAACGAGGCGGACTACAACTCCTCCGGAGACGAGCTGGACGACGACGACTTTGACAATGAATTTCCTGCCATAGCGAACGAGGCGGAGCGCACCGACTACAAGCGGCAGTTTGACCGCGACCACAAGGAGTACAAAGACCTGCAGGCGGAGCTGGACGCGCTCAACAAGAACCTGTCGGACGTGGACAAAGAGCTGGACGAGCTGCAGGAGGGCAGCCCACAGTTCCTGGATGCTTTGGATGAGTACAACAGGATTAAAGACATTAAAAAGACTCCAGACTACCAGGTGAAGAAGCGCAGGTGTAAATATCTCAAGTCCAAGCTGAGCCACATCAAGAAGATGGTCAGCGACTACGACCGCAAGGCCTGAACAACTCTGTGAGGATGTTAACGCCTGTTTGAGACGGGAAAGAAAGGACAAAAGTTTTTTTgggtggggggcgggggggtgttGGAGGCTTTTCAGACCACGGCAGACTGTAGAGAACGGAGCTACACTGATATAACCCAGAAGTCTGTCTGAGCTGTTAGCAGGGGAAACATTGCAAAGATTGTTTTATACTTTGGAGGCACAGAAAACTAAGATTCTCTCTTGTATTATATTCCAGTCTCTGTGTTGTCAATATCGCCTGCtatttgcatttaaatgtaatttattttttgcaaaAGTTTGAAAAAGTCTTTTGGAAAAGTCTTTTGGAATAGTCTTTGAGGAGTTAGGATACTACATAGTGGAGTGAACACACTCATTTATaatccttgtttgtttttaatagcTCTTGTTACAATGGATTCAACATGAGATGCTAATTTGTGAAGATATCTTTAATTCTCATTTTTAATCCTTTCTCGGCGATGTAAAtatgtgggaaacactgttttTAGAAGTAAGTTcacgtttgtgtgtttgttttatggaTGGTAGAACAGACGGACACTTTTACAATGATTATGCATGTTTAATGTGTATATACGTATGTACTTTTACAATGAGTTGTGATAcctttttattataataaattaatttgTTAAACTA

Function

NR:

description
occludin isoform X1

GO:

id name namespace
GO:0005923 bicellular tight junction cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG:

id description
K06088 OCLN; occludin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039780776.1 True 2310 mRNA 0.51 9 29553358 29568249

Neighbor

gene id symbol gene type direction distance location
marveld2a marveld2 coding upstream 5336 29535795 ~ 29548022 (+)
pi4kaa LOC104948040 coding upstream 25886 29474565 ~ 29527472 (+)
slc25a1b LOC101069509,LOC103373622,LOC106568272 coding upstream 80383 29460509 ~ 29472975 (+)
tor4aa tor4a coding upstream 112322 29430110 ~ 29441036 (+)
LOC120546010 brap,LOC102795910 coding upstream 125176 29412197 ~ 29428182 (+)
LOC120544985 NA coding downstream 15794 29584043 ~ 29587640 (+)
ckmt2a ckmt2 coding downstream 101323 29669572 ~ 29690308 (+)
zfyve16 LOC101158542,LOC107104482,LOC106569324 coding downstream 172183 29740432 ~ 29790668 (+)
sec14l7 LOC103371288,LOC105915608,LOC104948033,LOC101066937,LOC106935672 coding downstream 263114 29831363 ~ 29841705 (+)
LOC120545067 cnnm4,LOC103473218,LOC107395816 coding downstream 278104 29846353 ~ 29882921 (+)
G178728 NA non-coding upstream 8617 29544159 ~ 29544741 (+)
G178725 NA non-coding upstream 21999 29528425 ~ 29531359 (+)
G178710 NA non-coding upstream 94822 29445053 ~ 29458536 (+)
G178521 NA non-coding upstream 520996 29031515 ~ 29032362 (+)
G178491 NA non-coding upstream 644987 28904473 ~ 28908371 (+)
G178835 LOC104948034,LOC103371291,LOC107101750,LOC105915605 non-coding downstream 124189 29692438 ~ 29701839 (+)
G178847 NA non-coding downstream 204071 29772320 ~ 29790111 (+)
G178848 NA non-coding downstream 204402 29772651 ~ 29773165 (+)
G178858 NA non-coding downstream 234048 29802297 ~ 29803683 (+)
G178854 NA non-coding downstream 271587 29839836 ~ 30106722 (+)
G178529 NA other upstream 461032 29084949 ~ 29092326 (+)
ptpn11a ptpn11 other upstream 470347 29006621 ~ 29083011 (+)
G178506 NA other upstream 607914 28944507 ~ 28945444 (+)
LOC120544907 hnrnpd,LOC104960871 other upstream 965326 28580268 ~ 28588032 (+)
LOC120545218 NA other upstream 980963 28567146 ~ 28572395 (+)
rasgrf2a NA other downstream 33282 29601531 ~ 29667231 (+)
G178845 NA other downstream 174374 29742623 ~ 29750295 (+)
LOC120545429 LOC104948058 other downstream 225555 29793804 ~ 29795825 (+)
G178881 NA other downstream 453070 30021319 ~ 30022217 (+)
zmiz2 zmiz2 other downstream 691117 30259366 ~ 30310894 (+)

Expression


Co-expression Network