G178858


Basic Information

Item Value
gene id G178858
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 29802297 ~ 29803683 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU242123
ctggtgtttccccctctcattccccctgctctggtgttcccccctctcattctccctgctctggcgtttccccctcgttccccctgctctggtgtttcccctcctcattccccctgctctggtgtttccccctctcattccccctgctctggtgtttccgagcccccaaaccggagacatttggaaacacttccgattggttttggtttggaatcagCGGGGtcgtgttgcagtctcaacggccgccAACGGAGACCTTCGGCAAAACACGACTCTGATTTAATGATCAGTTTGACTGTACCGGCCGTGGTTACTTAGACTTGCCTGGCTTAATCTTTGATACAAGCATTATGCAACGTTTCGCCGCCCGATCGGGTCTTATCGGTCACGACggctcgttctctgagactaaagcTAATAACGTTGCCACGGCAACTACCAGCAGCGGGCGGAGtctccacgctgcctcctgtttatgtccAGTGTACCAGGATGTTGAGgagatattttggtttgggcgtgttagtttaaacagagattagttctactggagctaaaaacacttgtgATCGCTAttggctcaaaactctgcttaaaaaccaaaacgtagcgatgtaaatgtagccttatcTTATCGATTCTTATTCCCctaaagcccgagacacaccgagccgataatcggccgttggacagccgtcggccttcattttggccgatttttACTTGTTGAATCGGCAGTTGGGCTCAAATgagccatctgattggtggagagctaacccggaaacagggagcgggatgaggtgactagagtctctcaaaatctgaggaagatcttttaaactgacctttgttgagctgaaatgaagacagattcagcgactgcacacggcctatttctctcttaaaatgtttccagaaacacgtttcggtgaactgttTTAGTCCGATATGAGATCGACATCACAGAGtggcgccgcctgctgttacgGAGACGTATtgcgtctcttcggtgtgttccgagtagggttgggtaccgaaactcggtgccaatagggaaccggtgccgacgtaaactgtagtaacgagaccgaataagaacgaaagtttcggtgcctcatttcggtgcttgactttacactacacctgacagcacgtaacgttagcctacctttagctagcagctggatcaaacaccggtaaaatgctgacagctaacgttaaacagtgtaaagtgtgactgaatttcactgtggaggacttcaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU242123 True 1263 lncRNA 0.50 2 29802297 29803683

Neighbor

gene id symbol gene type direction distance location
zfyve16 LOC101158542,LOC107104482,LOC106569324 coding upstream 11629 29740432 ~ 29790668 (+)
ckmt2a ckmt2 coding upstream 111989 29669572 ~ 29690308 (+)
LOC120544985 NA coding upstream 214657 29584043 ~ 29587640 (+)
oclna LOC103389949,LOC103373407 coding upstream 234048 29553358 ~ 29568249 (+)
marveld2a marveld2 coding upstream 254275 29535795 ~ 29548022 (+)
sec14l7 LOC103371288,LOC105915608,LOC104948033,LOC101066937,LOC106935672 coding downstream 27680 29831363 ~ 29841705 (+)
LOC120545067 cnnm4,LOC103473218,LOC107395816 coding downstream 42670 29846353 ~ 29882921 (+)
LOC120545406 cnnm3 coding downstream 91994 29895677 ~ 29925265 (+)
il1b NA coding downstream 147769 29951452 ~ 29965248 (+)
gnsb gns,LOC104931705,LOC103374629 coding downstream 257917 30061600 ~ 30088020 (+)
G178847 NA non-coding upstream 12186 29772320 ~ 29790111 (+)
G178848 NA non-coding upstream 29132 29772651 ~ 29773165 (+)
G178835 LOC104948034,LOC103371291,LOC107101750,LOC105915605 non-coding upstream 100458 29692438 ~ 29701839 (+)
G178728 NA non-coding upstream 257556 29544159 ~ 29544741 (+)
G178725 NA non-coding upstream 270938 29528425 ~ 29531359 (+)
G178854 NA non-coding downstream 36153 29839836 ~ 30106722 (+)
G178851 NA non-coding downstream 86662 29890345 ~ 29893184 (+)
G178859 NA non-coding downstream 122051 29925734 ~ 29995516 (+)
LOC120545430 NA non-coding downstream 152587 29956270 ~ 29958389 (+)
G178882 NA non-coding downstream 219348 30023031 ~ 30023479 (+)
LOC120545429 LOC104948058 other upstream 6472 29793804 ~ 29795825 (+)
G178845 NA other upstream 52002 29742623 ~ 29750295 (+)
rasgrf2a NA other upstream 135066 29601531 ~ 29667231 (+)
G178529 NA other upstream 709971 29084949 ~ 29092326 (+)
ptpn11a ptpn11 other upstream 719286 29006621 ~ 29083011 (+)
G178881 NA other downstream 217636 30021319 ~ 30022217 (+)
zmiz2 zmiz2 other downstream 455683 30259366 ~ 30310894 (+)
LOC120545414 LOC106676976 other downstream 520429 30324112 ~ 30331614 (+)
G179407 NA other downstream 1584064 31387747 ~ 31480094 (+)
LOC120545154 hapln1,LOC101070352,LOC100699000,LOC101480665 other downstream 1761562 31565245 ~ 31653583 (+)

Expression


Co-expression Network