RNA id: TU240567


Basic Information

Item Value
RNA id TU240567
length 558
RNA type TUCP
GC content 0.53
exon number 1
gene id G177715
representative True

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 25533132 ~ 25533689 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gcgcttcaggtgtttggataggtcaggaggcactttacagtacagtcctcaaaaagtcgcagcattctttgtggcttgttgtgttttacacaacatttccatgaatcatggatgtgttgatgacataaatgaggaaatattagaggacttaaggagacgtgatgttgaactacggcgggatctggtccgggagtaatgcgcgatgtgctcctggtggagcgggtggacggagatggagtggggggaagaggaaggggcacaacaggtgcaggtggtgcgtttggaggcccacgctccatggctgcagcaatcctctccagacttgaggagatgcgcccgagtggccgcagcaacatcgccacccggccaagacgggcatttattactttgccgcatctcgcatcggcagctcctgctggcgtgcgccaggaaaatccgccgtcataatagcaatccgccatggaacaagcgccctgctcttaaagggaatgtgagatgacgctctgattggtttattgcacgttacgcccaaaccacacctagctacttcagaccaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU240566 lncRNA upstream 3178 25529711 ~ 25529954 (+) True G177714
TU240563 lncRNA upstream 19690 25513018 ~ 25513442 (+) True G177711
TU240532 lncRNA upstream 20180 25509319 ~ 25512952 (+) True G177681
TU240497 lncRNA upstream 275695 25245583 ~ 25257437 (+) True zgc:63972
TU240490 lncRNA upstream 328645 25204255 ~ 25204487 (+) True G177651
TU240601 lncRNA downstream 162987 25696676 ~ 25697262 (+) True G177747
TU240602 lncRNA downstream 174258 25707947 ~ 25710600 (+) True G177748
TU240606 lncRNA downstream 195984 25729673 ~ 25733004 (+) True G177751
XR_005636755.1 lncRNA downstream 278779 25812468 ~ 25813235 (+) True LOC120545910
TU240628 lncRNA downstream 292054 25825743 ~ 25825989 (+) True G177760
XM_039779387.1 mRNA upstream 100128 25281918 ~ 25433004 (+) True LOC120545226
XM_039779393.1 mRNA upstream 100128 25281919 ~ 25433004 (+) False LOC120545226
XM_039779389.1 mRNA upstream 104040 25276529 ~ 25429092 (+) False LOC120545226
XM_039779388.1 mRNA upstream 104040 25281918 ~ 25429092 (+) False LOC120545226
XM_039779392.1 mRNA upstream 104040 25289686 ~ 25429092 (+) False LOC120545226
XM_039780876.1 mRNA downstream 373536 25907225 ~ 25928139 (+) True agpat2
XM_039780878.1 mRNA downstream 373536 25907225 ~ 25926964 (+) False agpat2
XM_039780877.1 mRNA downstream 373780 25907469 ~ 25928139 (+) False agpat2
XM_039779778.1 mRNA downstream 435767 25969456 ~ 25972785 (+) True LOC120545451
XM_039779776.1 mRNA downstream 448981 25982670 ~ 25986678 (+) True LOC120545450
TU240496 other upstream 228100 25245583 ~ 25305032 (+) False zgc:63972
TU240416 other upstream 821491 24702971 ~ 24711641 (+) True G177596
TU239996 other upstream 1805890 23723500 ~ 23727242 (+) True rpl37
XR_005636816.1 other upstream 1807080 23725974 ~ 23726052 (+) True LOC120546141
XR_005636817.1 other upstream 1808887 23724166 ~ 23724245 (+) True LOC120546142
TU240625 other downstream 299869 25833558 ~ 25842443 (+) False G177759
TU240698 other downstream 484475 26018164 ~ 26021831 (+) True G177809
TU240757 other downstream 689426 26223115 ~ 26223598 (+) True G177848
XR_005636776.1 other downstream 1052958 26586647 ~ 26614959 (+) True LOC120546038
XR_005636774.1 other downstream 1052958 26586647 ~ 26614959 (+) False LOC120546038

Expression Profile