RNA id: TU240497


Basic Information

Item Value
RNA id TU240497
length 3224
lncRNA type sense_over
GC content 0.42
exon number 3
gene id zgc:63972
representative True

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 25245562 ~ 25305032 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTTATCTCTGCCTTTGACCGTCCGACCTAAAGTACCTGTCAACGCAATGCGCTTCTTCTGTAAAGGTAATGAGTTTTCTGAATGTTTTTCTCTCGCGAAGCAGCTGTTTAACCGGTGCTGAAATGCTTATTAAAAATGACGGAACACTAATCATCCCCGGAGAAAGTCTTAGCGGTTTTATGAACGAAGTGTGTCCCTCTTTTATTATCTGCACCAGCCGGCCGGACTTTGGGAATGACATTTGTTGCCACTGGCAGGATGGAGTGGCTGTTCCAGCGGTGCCCTAAAGAGGctgtcttcctctctgtctgtcggtcGATGCTGCTCATTTCATGTTTGGTAAGAGCCACTGTGATGATTCCATACGCTTCTTATGATCATTTCTCATTTGAAAACTTTGAGAAAAGTCCTAAGTAATCCGTAACAAGAAGGCTTCGCCGTCGGGAAACGCTAAATTGTTATTAATTGCGTTTGTTCTCTAACATATTTGTGTTAGGATTTACATGCAGTCTATGTCTGGCTGTGATGCCGTTGCTGTGCAGAGAAGTAGGACAGATTATAAATTGGTCACTGCGTCCAAGCCGAGGCCTATATACTCATTTATCTGTGACAGACAGCGCCAAATAATAAGAGGATAAATACtgaatccaatccaatccaaacATGCAATCCTTTCAGAGCACAGTAGATAATTAAATTGAGTTATAACTTTGTCTCATCCAAACATAAAACAGCAAGAAACAGCCAAATGTCCAAATAATTTATGTCAGACACAAAACATCATCCCGGGATGCCACAACCATGCATCTTAAAGCCTGTTAGGTAACTCTGACATTTCAACCATTTGAGATGTCCCTTATTgcatccacccacccacaccaCACCCAACCCCTGTATAGCTCTTGGTCCTGTCCGTGTCCATGTATCCTGGGTTGCAGTCCATTGGGGTCCAGCTTCATTCAGCCATCACAGGGAGTTATGTACCAGGCCACCACTCTGTTCTTCTCATCAACAGTCCCAACAAACAGGCAGCCAAGGACATTGGCAGggcGATCATGGAGAGGCGGattgaatgagaaggtgtgtccaaacttttggcctgtactgtattaatCTGTAGGTAACTATAACAGCACTTTGTGCTATGTCTCAGTTAACTCTACTTGGTTAAACTGACCTACAGTAACATGGCTGAAACTGACCACAAACAAGCTTTTAAAATTGGATGACAATTTAAACAGCCTGTGGAAAGTAACCATAGAATAAGTGAGATATTAAATTTAATGTATTCTTGCTTATACATTGCTGCACCTCTTTTACAAATAACACTATCCTCTAATGGCAGTAATCTTTGAGGATTTGCATTTGATGAAAATGCCCTCTAgtcctagcctggttgacaccagaccctcctcagttgtaactgagagtgggtctggggaaggttcactcacagctcatttccaaaggggcgtcaccactCAAATGCGTCTGGGCgtaattggatagtccttcaaccaatcagaccaaagatccggttgacgtagcagcgacagcggcatcaatgggttgctgcgcttcggtggcaatgttcggtggccgtcatgttgaatgtaaacaaaaagctgctcgccgtcgcttcgctatcgtcatcgtgtaaagcccgcctctacggttgtgattggtgcctcgatttggaaaaattggaaatgggcttgaatgggctcttggccagactgacttgcagagcaaatcttaaatttgccggaagttcgtcagggtttccCAGGCTACTCTAGTTCTGCTTTTTATGCGTTATGTTTTCGGTTCGGTTTgtccttttgtttttctgtcagaAAGCTATTGGCCTGATTTTAATGAAACTAAgtagaagggtgtagcatgggccaagcaagaacccattacatttggGAGTGGATCTGAATCACGTAGctgatacacaaattatttttcaatttgGTTAACTTTGACTTCCAAACTGCGAacattcacactgcattaacattgtgaaataGGTCAGATGTCCGCGTTCTCTGAATGCCCTTCtagttatttatgtatttattaagtTGACATCACTCTTGTCGGCGGCCATTAAGTTCTGCCTTTAAGGTAGGTTTAACGTAGTTTATGCTGGAACATATTGATGGCATGACTTATACTATACTGATAATAACTATAGTTATTGTAATTCCTATTAGCATAGACATGTTTTGCCTGTTATTGGACATAACATTGCCCATACTATAACATTACTTTATActagttattgttattaatttgaaagtaaaaaatgtTCTAAAGCTTTTCACTAAAACGTTAAAGCCTTCCAAAAGAGAGAAACCTGAGCAGCAACACTCAGACAGGACATCAAAGCAATCTACCTACGGTTCACTGGATTATTGAtctgtgtgaaaccaaaaccgTTTGCCTTTAGTACTGTATTTACAAGTAAAAAAGGCAACACTGCTGAATTTCAGTACTCCTTTGCTCCCGGTTAGCTCAGTTTGAACTACTGAAACATTCACTACCACCTTGTATAACCTCAAACAGAGCTACACCGTACTACGGAGGGTAAATTAACGAACCGTTATGACTGACAGCTCTCTGCATTATTGCCTACTTGAGCCCGTCTCTCCTTTGTATTTCTAACAACtaattataaaatgttttcattgttttgtttgcaTCGTGAAGTAACTGATGCTGTTCCGAGCAGGTCTCGTTTGGATAACGCATCCTCGTTCTCGATGGGTGCCACAGGAGTAGTCTTGCCAAATAAAACTTAAATtgaatcacaaaaacaaactaattTGGTCATCAGCTCTCAGCTATAGTTGCTCATCTTGAGAGCATCACAGGTCTTGTTATCTGGATTCCTGCTTCCACAAAAATTCATTGGAGATATGGTACATGGCCGCAGAGGTTTAATTAATTACATTTCAAAAAAGaactttattaatattctgAATTACAACAAATTCGGTTTTACCATGCCATATTTGCGGTTATACAGGTTAGCCATGCATGCTTACCTCGTTAGACAAAGATACGCACTCAGTCTGCAGAAAGTGTTTCCGGCATGAGGCCCTAACAAAAGAACTGCAGACACGGTTTAGTCAGTGTTGTGTCTGTGGGCCAAAATAATCCTCCCCATCAGGTCCGGAGATCAGGCCGTttagtggctgtgtgtgtgtgtgtgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU240490 lncRNA upstream 41096 25204255 ~ 25204487 (+) True G177651
TU240482 lncRNA upstream 56952 25187680 ~ 25188631 (+) True G177645
TU240478 lncRNA upstream 245542 24999803 ~ 25000041 (+) True G177643
TU240436 lncRNA upstream 437964 24800117 ~ 24807619 (+) True G177608
TU240402 lncRNA upstream 558781 24684059 ~ 24686802 (+) True G177586
TU240532 lncRNA downstream 251882 25509319 ~ 25512952 (+) True G177681
TU240563 lncRNA downstream 255581 25513018 ~ 25513442 (+) True G177711
TU240566 lncRNA downstream 272274 25529711 ~ 25529954 (+) True G177714
TU240601 lncRNA downstream 439239 25696676 ~ 25697262 (+) True G177747
TU240602 lncRNA downstream 450510 25707947 ~ 25710600 (+) True G177748
XM_039780831.1 mRNA upstream 60448 25053517 ~ 25185135 (+) False fibcd1b
XM_039780830.1 mRNA upstream 60448 25072566 ~ 25185135 (+) True fibcd1b
XM_039780832.1 mRNA upstream 60448 25072566 ~ 25185135 (+) False fibcd1b
XM_039780706.1 mRNA upstream 482695 24758670 ~ 24762888 (+) True ptger4b
XM_039778736.1 mRNA upstream 713624 24528667 ~ 24531959 (+) True ptges
XM_039779389.1 mRNA downstream 19092 25276529 ~ 25429092 (+) False LOC120545226
XM_039779387.1 mRNA downstream 24481 25281918 ~ 25433004 (+) True LOC120545226
XM_039779388.1 mRNA downstream 24481 25281918 ~ 25429092 (+) False LOC120545226
XM_039779393.1 mRNA downstream 24482 25281919 ~ 25433004 (+) False LOC120545226
XM_039779392.1 mRNA downstream 32249 25289686 ~ 25429092 (+) False LOC120545226
TU240416 other upstream 533942 24702971 ~ 24711641 (+) True G177596
TU239996 other upstream 1518341 23723500 ~ 23727242 (+) True rpl37
XR_005636816.1 other upstream 1519531 23725974 ~ 23726052 (+) True LOC120546141
XR_005636817.1 other upstream 1521338 23724166 ~ 23724245 (+) True LOC120546142
XR_005636689.1 other upstream 1786978 23440990 ~ 23458605 (+) True hnrpkl
TU240567 other downstream 275695 25533132 ~ 25533689 (+) True G177715
TU240625 other downstream 576121 25833558 ~ 25842443 (+) False G177759
TU240698 other downstream 760727 26018164 ~ 26021831 (+) True G177809
TU240757 other downstream 965678 26223115 ~ 26223598 (+) True G177848
XR_005636776.1 other downstream 1329210 26586647 ~ 26614959 (+) True LOC120546038

Expression Profile