RNA id: XR_005636817.1


Basic Information

Item Value
RNA id XR_005636817.1
length 80
RNA type snoRNA
GC content 0.32
exon number 1
gene id LOC120546142
representative True

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 23724166 ~ 23724245 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTCTTGTCAATGATGTTTATAAACACAAATGTCTGAACAAATGATTTCCTATGATTCATTCTTCTGTACTGAGACAAGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU239954 lncRNA upstream 4793 23673262 ~ 23719373 (+) True G177284
TU239890 lncRNA upstream 187768 23535883 ~ 23536398 (+) True G177244
TU239805 lncRNA upstream 297264 23424844 ~ 23426902 (+) True G177177
XR_005636637.1 lncRNA upstream 376773 23336307 ~ 23347393 (+) False LOC120545237
XR_005636748.1 lncRNA downstream 210602 23934847 ~ 23935801 (+) True LOC120545825
XR_005636749.1 lncRNA downstream 211756 23936001 ~ 23936681 (+) True LOC120545826
TU240106 lncRNA downstream 211758 23936003 ~ 23936681 (+) False LOC120545826
XR_005636617.1 lncRNA downstream 245012 23969257 ~ 23971641 (+) True LOC120545017
TU240190 lncRNA downstream 415173 24139418 ~ 24150168 (+) True G177452
XM_039780044.1 mRNA upstream 61961 23651723 ~ 23662205 (+) False rnf165a
XM_039780498.1 mRNA downstream 6673 23730918 ~ 23747392 (+) True pdcl
XM_039779268.1 mRNA downstream 30490 23754735 ~ 23757305 (+) True LOC120545180
XM_039780131.1 mRNA downstream 65637 23789882 ~ 23813730 (+) True notch1a
XM_039780369.1 mRNA downstream 91076 23815321 ~ 23840033 (+) True LOC120545788
XM_039780371.1 mRNA downstream 91076 23815321 ~ 23840033 (+) False LOC120545788
XR_005636689.1 other upstream 265561 23440990 ~ 23458605 (+) True hnrpkl
TU239701 other upstream 539904 23182673 ~ 23184262 (+) True G177094
TU239589 other upstream 715354 23006267 ~ 23008812 (+) False klhl8
TU239380 other upstream 1186829 22531908 ~ 22537337 (+) False G176870
TU239368 other upstream 1199798 22496413 ~ 22524368 (+) True LOC120545252
XR_005636816.1 other downstream 1729 23725974 ~ 23726052 (+) True LOC120546141
TU240416 other downstream 978726 24702971 ~ 24711641 (+) True G177596
TU240496 other downstream 1521338 25245583 ~ 25305032 (+) False zgc:63972
TU240567 other downstream 1808887 25533132 ~ 25533689 (+) True G177715
TU240625 other downstream 2109313 25833558 ~ 25842443 (+) False G177759