RNA id: XM_039779268.1


Basic Information

Item Value
RNA id XM_039779268.1
length 1564
RNA type mRNA
GC content 0.42
exon number 6
gene id LOC120545180
representative True

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 23754735 ~ 23757305 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCGCTCTGTGAAAGCCTAACGTCATTAATGCGCGACTCGTGTTTATAGACAGCCGTCAAAAATTAAATTTCCAAATCTCAGCTACTTTAACCCTAAAAACGGGAGTCATATTTTAGCTTATAGCATGAGTGCCTAAAGAAGACAAATATTTTAGTTAaaatctgcatttttttttacgcaTGATTTTGTCGATGTTGTCTTCATGTTAATGTGATTGTTTTAACCTGTGAACCAAAAAGTTGGCAGAGGTCAAAGTCTTCTGTAAATCTAATAATAACAAAGATACGATGTGGTGTAACATGGCACCTGCAAGCAGTGTCTTAATGTGAAAAGTCAAACATGGATCAAGCAGAAGATCTGGAGACACTTGGTGAGAAACTGTACGCTCTGATTTACCCCAAACACGCAGAGAATGCTGGGAAACTCACAGGGATGCTTCTGGAGCTGCCAGGTCCTGTTCTGAGTCAGATGCTGCGGGACAAGGCCACGCTGAACGCAGCCGTGGAGAAAGCCCTCCGAGCCCTGCAGCTGGCGCAGGAGCCCAGCAAGGTAACATGTAAGGACGAGGatgatgtgtctgtgtcctctgactctctggGGGAGCAGCTGTTTGAGCTGGTGAATGTTTACAACACTGGCCACTCACAGAAAATTACAGgaatGCTTCTGGAGCAGCACAAAGAGGCAGTTTTAAACCTTCTTTCAGATCCAACTCTGCTGGAAGAGCAGGTGAACTTCGCCCTAAAGACACTTAAGGAACAGAACATGGAGGAGATGGACATTAGTGATTTGTCAGACGCCGACGACACAGAGAGGCTGGGAGAGAAGATCTTCTCACTGGTGGAAGAGCTGGATCCACTTCATGCAAATGATATTACAGGTATGCTACTGGAGATGGACCCAGCTGCTCTCCAACAGCTGCTCAGTGACCACACGGTGCTGGAGGTTGCTGTTCAGAAAGCACAAGCAGCACTGGACACACATAATCAAACTCTCTCTACTTAAACAGAAGAGGACAACACCATTTTACACACAGAATAAGACATCAATAAATGAACGACTTTGATGAACTCGGATAATATAATTCTGGGAAAAGCTGGCACATCATACAAGTTACCTACAAGCAGCTATCTTTGTTTTATTCTGATTGTTGAGCGGACTGTGGAGTCTGGTTTGACTGGACTCACTGTAAATAATTGAAGAGTCTAGTAAGCccaaatgtattaaaatatattacCCCTTTCTAATACAGGTGCTCACTTTGCGAGCACTTTGTCTTTCTCAGATAAGTGGACTGAACATAAGTGCCAGTGTCTAATGAAAAACATTGATCAATCAATATTGCTCCATCTGGGAGCCGAACTTAAACAAGACATCCGAATCATTGTCGCTGCTCGATGAATATGTTTACGGTCAGAGGATTTACTTATAAGGCTGTAAAAGTGTTGCCAACAGTCAAGCTATGacattgtattacattttggatttGTACTGTACATAATAATGAAAGTGTAACTTGGTGAAATGTCTTTGCTAACAGAAAATAGAGCTGGTTATATACAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU239954 lncRNA upstream 35362 23673262 ~ 23719373 (+) True G177284
TU239890 lncRNA upstream 218337 23535883 ~ 23536398 (+) True G177244
TU239805 lncRNA upstream 327833 23424844 ~ 23426902 (+) True G177177
XR_005636637.1 lncRNA upstream 407342 23336307 ~ 23347393 (+) False LOC120545237
XR_005636748.1 lncRNA downstream 177542 23934847 ~ 23935801 (+) True LOC120545825
XR_005636749.1 lncRNA downstream 178696 23936001 ~ 23936681 (+) True LOC120545826
TU240106 lncRNA downstream 178698 23936003 ~ 23936681 (+) False LOC120545826
XR_005636617.1 lncRNA downstream 211952 23969257 ~ 23971641 (+) True LOC120545017
TU240190 lncRNA downstream 382113 24139418 ~ 24150168 (+) True G177452
XM_039780498.1 mRNA upstream 7343 23730918 ~ 23747392 (+) True pdcl
XM_039779665.1 mRNA upstream 27571 23723478 ~ 23727164 (+) False rpl37
XM_039780043.1 mRNA upstream 92530 23651724 ~ 23662205 (+) False rnf165a
XM_039780131.1 mRNA downstream 32577 23789882 ~ 23813730 (+) True notch1a
XM_039780369.1 mRNA downstream 58016 23815321 ~ 23840033 (+) True LOC120545788
XM_039780371.1 mRNA downstream 58016 23815321 ~ 23840033 (+) False LOC120545788
XM_039780370.1 mRNA downstream 58016 23815321 ~ 23840033 (+) False LOC120545788
XM_039780372.1 mRNA downstream 58016 23815321 ~ 23840033 (+) False LOC120545788
TU239996 other upstream 27493 23723500 ~ 23727242 (+) True rpl37
XR_005636816.1 other upstream 28683 23725974 ~ 23726052 (+) True LOC120546141
XR_005636817.1 other upstream 30490 23724166 ~ 23724245 (+) True LOC120546142
XR_005636689.1 other upstream 296130 23440990 ~ 23458605 (+) True hnrpkl
TU239701 other upstream 570473 23182673 ~ 23184262 (+) True G177094
TU240416 other downstream 945666 24702971 ~ 24711641 (+) True G177596
TU240496 other downstream 1488278 25245583 ~ 25305032 (+) False zgc:63972
TU240567 other downstream 1775827 25533132 ~ 25533689 (+) True G177715
TU240625 other downstream 2076253 25833558 ~ 25842443 (+) False G177759
TU240698 other downstream 2260859 26018164 ~ 26021831 (+) True G177809

Expression Profile