RNA id: XM_039780498.1


Basic Information

Item Value
RNA id XM_039780498.1
length 3834
RNA type mRNA
GC content 0.49
exon number 16
gene id pdcl
representative True

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 23730918 ~ 23747392 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGGAAACTTAAGGGTTAAGCAACTATTTCCAAGGCCCGCTGCAGCGTAATTCTCTGTATTTTGACTTatcatttttataaataaatcttTGTGTTAACCTTTAATTTGGACCAAGCCTCTCCTTCTTCAGAGATTCTGAAACACGTAAATTCTCTACAGTCTCCGTCCCACCTTTTTTTACGTGTGACGGCAGGTAAAGGCGCAGTGCGGCGGGGCTGCAGCACTCTCAGATAGGAGTTAACCTGCTGGATTtctggtcctgctgcactctgatgctctcactctctgtctatCGACAActggctctcctcctcctcctcctcctcacaacCCTCTGAAACCAGCCCCCGGATATTTTCTTTCGGACACTTTTCTTAGAGTTTCATGAGTTGGAATAGAATTTGTCCTGAAGTGAGGCTGCTGGAATGAAATCTTCTGTCCTAGGATCAGTTTGTGCTCTGCTCCTGCTGTTGCGGGTGCCTGCATGCCGGGGTGATGAGGTTACTTCCAACACAGGAATGCTGAGCtatgaaaggggagagcgaggggggaagacatgcaagaaaaccgtcacagTGAACCCATGCTGTTATTTCCCCTGTCAGcactggggtgtgtgtgtgagatatggTGAGGACAAGTACGAATGTGACTGCACTCGTACCGGCTACAGCGGAGAAAACTGCACTGTCCCGGAGTTttggaccagagtcagtcagcttTTCAAGCCCAGCCCAGATGTGGTGCATTACACACTCACCCATTTCCACTGGCTCTGGGACATCATCAACTACACCTTCCTACGGGATGTCCTAATGCGGCTGGTTCTAACAGtGAGGTCTACCTTAATACCGAATCCTCCGACCTTCAACTCAAAGTATGGCTACCTCAGCTGGGAATCCTACCATAATCTGAGCTACTACACTCGGCTTCTGCCCCCAGTGCCAGAGGACTGCCCTACACCTCTGGGGGTCAAAGGCAAGGCTGGGCTGCCTGACCCTGAGCTGCTGGTTGAGAGGCTGCTGAAGAGAAGGACGTTCAGACCCGACCCCCAGGGCTCCAACCTCATGTTTGCCTTCTTCGCACAGCACTTCACCCACCAGTTCTTTAAGACCTACAATCGCATGGGTCTGGGCTTCACGAAGGCTCTATCGCATGGGGTGGATGCAGGGCACGTTTATGGAGACAACCTGAAACGTCAGCTCCACCTCAGGCTTCACAAAGATGGAAAACTCAAGTATCAGTTAGTTGACGGCGAGATGTTCCCTCCTTCTGTAGCTGATGCACCCGTTAGGATGAGCTACCCTGCTGGGATCCCTCTAAAGCGTCAGATGGCTATTGGTCAGGAAGTGTTTGGACTCCTCCCCGGTTTGGGAATGTTCGCCACGCTGTGGCTGAGGGAGCATAACCGAGTATGTGACATCCTGAAGGCAGAGCATCCCACCTGGGATGATGAGCAGCTTTTCCAGACCTCACGCCTCATCATCATTGGTGAGACAATAAAAATAGTGATAGAGGAATACGTGCAGCACCTCAGTGGATACCTGCTGCAGTTGAAATTTGATCCCACCCTGCTGTTTAACTCCAACTTCCAGTATGGGAACCGAATTTCTCTGGAGTTCAGCCAGCTCTACCACTGGCACCCTTTGATGCCTAACAGCTTCTTTATTAACAGAGATGAACTGGCATACTCACAGTTCATTTTCAACACTTCTGTTCTCACAAACTACGGCATTGAGAAGCTGGTGGATGCCTTCTCTCGGCAAGTCGCTGGCCAGATTGGCGGTGGCCATAACATCAATGCTGCCGTGACCAATGTGGCTGTGAGGACCATAAAGGAGTCCCGCCAACTCCGCATGCAGCCCTTCAACCAGTACAGGAAGCGTTTTAACCTCAAGCCATACACATCGTTTAGACAATTCACTGATAACGAGGAGATAGCGCGCGAGCTTGAAGAATTCTACGGTGACATTGATGCTCTTGAATTTTATCCTGGTTTGCTGTTGGAGAAAACACGAGAGGGGGCCATATTTGGAGAGAGCATGGTGGAGATGGGTGCTCCCTTCTCCCTTAAAGGCCTCATGGGAAACCCCATATGTTCTCCAGGCTACTGGAAGCCCAGCACCTTTGGAGGCAAAGTCGGCTTTGACATAGTAAACTCTGCCACACTGAAGAAGCTGGTCTGTCTGAACACCAGGACGTGTCCTTATGTGGCGTTTAAAGTACCAACAAAGCAGCAATCACAAAGAGGAAATGATGACAGTAAAGTAAGGACTGATGAGCTATGCATCATATTCCAGGAGAGTGGTTTGCTGCAGCTAAAGGAGCTAAACCAGCAGATTAACTGGATTGAGAGCAGTTGGGAGTTGGTGATATTTTTAACGGTAGCTGGTCAGAAATCAAGAGCCATGACGACTTTAGATGACAAGATTCTCGGAGAGAAGCTGCAGTACTACTATAGCAGCAGTGAGGATGAAGGCAGCGACAACGAGGATGAGGATGGGGAGAACAAGACCATCAGGGACGCTAGCGTCACTGAGCCTGAGATAGACTACAGCGCCGATGGAAGTGCTGTCAACACAGGACCAAAGGGTGTCATCAATGACTGGAGGAAGTACAAGCAGCTGGAGGTGGAGCAGAAACAAGAGCAGaaaagagagatggaaagaCTGATCAAGAAGCTGTCGATGACCTGCCGCTCAGACCTCGACctggaaaaagacaaagagaaacagaaagataTGCAGGACAAAATCAAAGGAAAAATGACCATGCAAGAGTACAACATGCTCCAGGAAGAAGAGGATGACGAAGACTTCCTCCAGCATTACCGTCTGCAGCGCATTGAAGAGATGCGGCGCCAGCTCTGCCGTGGCAAACGCTTTGCGCAGGTCTACGAGCTTAACAGCGGAGAGGACTTCCTGGAGGCTTTGGACAGGGAGGACCAAAGCACGCTGGTCATGATCCACATCTACGAGCCGGACGTCCCGGGCTGTGAGGCCATGAGAGGCAGTCTGATGTGTCTGGCTCAGGAATACCCGCTGGTCAAGTTCTGCAGCGTACGCAGCTCGGCCATCAGCACCAGTGCGCTGTTCAAGGAAAGTGCTCTGCCTGCTCTGCTTGTTTACAAAGGAGGGGACCTGATCGGCAACTTTGTGCGGGTCACAGACCAGCTCGGCGAAGACTTCTTTGCTGTAGACCTGGAGGCCCTTCTGCAGGAGTACGGCCTGCTGCCTGACAAGGCCCGCATCGTCCCGAAGACGGTTCGCAATGGAGCGATCGTACAGAACACTGTGAGCGATGAAGACTCCGACCTTGATATAGACTAGAGCCATAATATCTAACATGCATTATGCTTGGGGAAACATGCGTACACAGTCTGCATGGACTATAGAtcattttttatgtgtgtggcCCCCCGTAGCGATGAGGGACTGAGCCAGGATTGCATTGAAGCAAGTTAATGCACACAAAACATCATGGCCCTGTGAGTTTTATCATGACCGCAATCTATAGTAAACATaagttgttattattaataaaagtacatttttttttttgccattaatAATATCGAGGACCTGTTATGCACAGTGAGAATGATGTAGATGTTaggtgaaatgttttgtttgagCTGTGACTGTCAACTATTTATTCGTTGTGTAAGAACACATTCCCTGTTTTTGTTTCTCGTGCGTCTTCATCGTATTAAATGTGTTTCACTCTGTAGAATACGAATCCTGCAGCCCAAACTTACTTGTAGTTAATTTTATAACTTTTATATGTGCTGTACCATTTCAAATAGTGGGAAGAATAAACAAATGTTTGGACTCA

Function

GO:

id name namespace
GO:0006979 response to oxidative stress biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0004601 peroxidase activity molecular_function
GO:0020037 heme binding molecular_function

KEGG:

id description
K00509 PTGS1, COX1; prostaglandin-endoperoxide synthase 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU239954 lncRNA upstream 11545 23673262 ~ 23719373 (+) True G177284
TU239890 lncRNA upstream 194520 23535883 ~ 23536398 (+) True G177244
TU239805 lncRNA upstream 304016 23424844 ~ 23426902 (+) True G177177
XR_005636637.1 lncRNA upstream 383525 23336307 ~ 23347393 (+) False LOC120545237
XR_005636748.1 lncRNA downstream 187455 23934847 ~ 23935801 (+) True LOC120545825
XR_005636749.1 lncRNA downstream 188609 23936001 ~ 23936681 (+) True LOC120545826
TU240106 lncRNA downstream 188611 23936003 ~ 23936681 (+) False LOC120545826
XR_005636617.1 lncRNA downstream 221865 23969257 ~ 23971641 (+) True LOC120545017
TU240190 lncRNA downstream 392026 24139418 ~ 24150168 (+) True G177452
XM_039779665.1 mRNA upstream 3754 23723478 ~ 23727164 (+) False rpl37
XM_039780044.1 mRNA upstream 68713 23651723 ~ 23662205 (+) False rnf165a
XM_039779268.1 mRNA downstream 7343 23754735 ~ 23757305 (+) True LOC120545180
XM_039780131.1 mRNA downstream 42490 23789882 ~ 23813730 (+) True notch1a
XM_039780369.1 mRNA downstream 67929 23815321 ~ 23840033 (+) True LOC120545788
XM_039780371.1 mRNA downstream 67929 23815321 ~ 23840033 (+) False LOC120545788
XM_039780370.1 mRNA downstream 67929 23815321 ~ 23840033 (+) False LOC120545788
TU239996 other upstream 3676 23723500 ~ 23727242 (+) True rpl37
XR_005636816.1 other upstream 4866 23725974 ~ 23726052 (+) True LOC120546141
XR_005636817.1 other upstream 6673 23724166 ~ 23724245 (+) True LOC120546142
XR_005636689.1 other upstream 272313 23440990 ~ 23458605 (+) True hnrpkl
TU239701 other upstream 546656 23182673 ~ 23184262 (+) True G177094
TU240416 other downstream 955579 24702971 ~ 24711641 (+) True G177596
TU240496 other downstream 1498191 25245583 ~ 25305032 (+) False zgc:63972
TU240567 other downstream 1785740 25533132 ~ 25533689 (+) True G177715
TU240625 other downstream 2086166 25833558 ~ 25842443 (+) False G177759
TU240698 other downstream 2270772 26018164 ~ 26021831 (+) True G177809

Expression Profile