RNA id: TU240625


Basic Information

Item Value
RNA id TU240625
length 2398
RNA type TUCP
GC content 0.44
exon number 6
gene id G177759
representative False

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 25829718 ~ 25849122 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

aaaagaaagcacaTTCTAAGGGGGCTATTAGTTactaatttgttcaataaatttataaaaaattacCCCTAACTTTGACAACTTTGTCATGTTGTAACAGCTCTATGATTACTCTACAGCATGCAAAATTTGAGGTTTAAGGGGTGGgcgcattttttatttttttcttcagtttagCCTACAAAAATATCTTTTAATATGTATTCATACTTTACAGCAGATTGAAATTACATCTGCATGATTGCACATCGAGCATGCTTTCCTTTCATGGTACAACAAGtgaacaaaacacaacagcTTTCACTTGATGTTCGTTGCCACTTCAGATGGTGCATACATTCACTCAGCCGTGATTTATAACCATACTGACTGAAATATTGGACCGAGGTTGTGGATCCGACTTCTGATTAAAAGCTAAGTTAATTTGAATGAAATAATGTCATCTGAAATcttaacaaaaaacacaatatacatataaaaaaatcaaGTATTGTGTGTTTGAAATGTACATGTGATCATTGTTGGTGGGTGATTCCTCCCATCATGCTCAGCTTTgactgggagggggggggggtcctgttttattttgtatgaccactaggtggcactgCAGTGAATGGGAGGTGAGGAACTAAAAGCTTCTTCTTCACACACATCTTACACAACCTCCTCCTGGCTCAGCTCACATTCAGTGTCATTACCTAAACATTACCAAATGTTTTCTTCGGAGCTTGAAAAAACAGCGTACAGTGACTCGCTATCACTCACACTATCGGCAGCAACTGTCCCAACTGTCATGAGGCACAATGGACAaatctgatgtgtgtgtgtgtgtgtgtaggggggggTATTCTCTTATCTGAGCTACCAGTAATAATCTGTAGTCTCCCTAACTTGCCCCACTCATACAGCAGTGAATTGAAAATAATTGACTCacagtaacaacaacaacacacttgCTGAGTTAAATGTATGTCATAGCACCTTTGGCATTTGTTTCCAAAAAGACCTCGACGTAGGACGAGGGGACGTATCCCTCCTCGTCCTCGTTCCTGCGCACTCGTGTCCAGCCGTCTCCTTTGTCCTCTTCTATCACGTACAACAGCTCGCCCTCTGCCACGGCGATAGTGCCCTCATTATGACCTTCAAATGGATACAAGGCTTTGCAGGTCCCGATGGTGGGCAGGGTCTCCTCATCGTCAAACTCGTCGTCGAACTCTGgggtggaggaggtgggggggaTGGGGTTGATGTTGGCTTTGACCTGAGTCTCTGAATTCTGCTCCTCTGTGTAGCTGCCATCCGGGCTCTCTCTGTCCTGCGCACAGTTGTTGCTCACTGTGGTGTTGTTCTGGGTCTCATAGAGTCCACTTCTCCGGTTCGTATCACTCTTGGATGGCATCCTTTCCTCCACCTCTGCTAACCagccCTCGAATTTCTGCGTTTCAAACTGGAGCTTCTCGATGTTCTGGCCTATTTCTGATAGCCTGGGGTCTACACTGGCCGGGTCTCCCATCTGAGGGTTCTTCACGTACACATCCCTCATCTTAGTTAGGGCGTCCCTCTGGTCCATCTCTTTCTGAATGTCCTTATTGAGTTCATCTATCTTGCCCTGCAgcttcttcctcctctgttcTGGTGGCAGGTGGCTGAAGTCCTCTGGTCCAGAGccCAGCTTGAGAGAAAGCTTCATgggggggagaggagagagaaatggcgaagagcaggagagagaaagagacacacagtcaATGTCAGGAGAATATTGCGgccatttgtttcattttcctttaaataaaaatggtaTTGTATTTAATGATAACTCTTTGCTGTGCCAAACTTCACCATTTAAGGAAAAGAGGGTATGGCACTTAAAGGCTTTAGGATTTGGATTCATATGCTAAGTTGTGGTATAGAAAAGTCTTTGAGTGACAGTTTCAACCCCCTATTTTTCTAATTTGGTGAAGTTTAGCATTTCTAATGTAATGGAttgatgaaaaatgaaaaaattacTTGGCAAAAAGGCCAACCTACTGCACAAGCATGAAGTAAAGAATGGGGAAACAAATCAAGGGAAGAcagatgaaaataaatgtaaggAAAGAAGTAGAGGGGTGGTGACTGCGACAGGGACGGATGAACCCTTTACTTCTTGATCCCTCTCCGCTGCCATCACAATGACACGCAGGCGACAGCAGAGGGCGCCAAAAGCATAAACACATTAGCAGATCCATACGTTGACATGGAGGCAGATACTgtacacagacatgagagtcgCTTTCAAAACCCAAAATATCGAAACTCACTCGTTACGAAGGACAAATCAACACATATCCAGGTCTATGTACTGTATAACTCAAGTGAAAGTCCCtgaataaaacaaataagagtAATTGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU240628 lncRNA upstream 7569 25825743 ~ 25825989 (+) True G177760
XR_005636755.1 lncRNA upstream 20323 25812468 ~ 25813235 (+) True LOC120545910
TU240606 lncRNA upstream 100554 25729673 ~ 25733004 (+) True G177751
TU240602 lncRNA upstream 122958 25707947 ~ 25710600 (+) True G177748
TU240601 lncRNA upstream 136296 25696676 ~ 25697262 (+) True G177747
TU240649 lncRNA downstream 85854 25928297 ~ 25930284 (+) True G177769
TU240687 lncRNA downstream 153001 25995444 ~ 25997698 (+) True G177802
TU240758 lncRNA downstream 377038 26219481 ~ 26244891 (+) False G177848
TU240788 lncRNA downstream 493864 26336307 ~ 26412013 (+) False LOC120545651
TU240790 lncRNA downstream 517951 26360394 ~ 26361272 (+) True G177874
XM_039779387.1 mRNA upstream 400554 25281918 ~ 25433004 (+) True LOC120545226
XM_039779393.1 mRNA upstream 400554 25281919 ~ 25433004 (+) False LOC120545226
XM_039779389.1 mRNA upstream 404466 25276529 ~ 25429092 (+) False LOC120545226
XM_039779388.1 mRNA upstream 404466 25281918 ~ 25429092 (+) False LOC120545226
XM_039779392.1 mRNA upstream 404466 25289686 ~ 25429092 (+) False LOC120545226
XM_039780876.1 mRNA downstream 64782 25907225 ~ 25928139 (+) True agpat2
XM_039780878.1 mRNA downstream 64782 25907225 ~ 25926964 (+) False agpat2
XM_039780877.1 mRNA downstream 65026 25907469 ~ 25928139 (+) False agpat2
XM_039779778.1 mRNA downstream 127013 25969456 ~ 25972785 (+) True LOC120545451
XM_039779776.1 mRNA downstream 140227 25982670 ~ 25986678 (+) True LOC120545450
TU240567 other upstream 299869 25533132 ~ 25533689 (+) True G177715
TU240496 other upstream 528526 25245583 ~ 25305032 (+) False zgc:63972
TU240416 other upstream 1121917 24702971 ~ 24711641 (+) True G177596
TU239996 other upstream 2106316 23723500 ~ 23727242 (+) True rpl37
TU240698 other downstream 175721 26018164 ~ 26021831 (+) True G177809
TU240757 other downstream 380672 26223115 ~ 26223598 (+) True G177848
XR_005636776.1 other downstream 744204 26586647 ~ 26614959 (+) True LOC120546038
XR_005636774.1 other downstream 744204 26586647 ~ 26614959 (+) False LOC120546038
XR_005636775.1 other downstream 744204 26586647 ~ 26614959 (+) False LOC120546038

Expression Profile