G177747 (LOC107090900,LOC101079510,LOC104964918,LOC103390068)


Basic Information

Item Value
gene id G177747
gene name LOC107090900,LOC101079510,LOC104964918,LOC103390068
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 25696676 ~ 25697262 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU240601
TTGTTATCTAATTTATTTGAGTCGTTTGGTCatataaaatgccagaaaagaCTATCTAAAGCCCAGGGGGACATCAAGATATTCTATACAGGAATTACAATCTGTGGAGAGGAAGTATTAGCCAATAGACCTGTCGGCTCATTTCAGATAGAGTGGAACACAAACCATCGGGGAAATCGGGGTGGCAGAGCTGCAGGTCTTTGCAGGTACGAGCGGGGTTGGTCTGTGTGCCCAGCGGGTGCTTCATCTGCTCGATCTCCAGTTTAAGGGAGTTGAGCGAGCCAAAGATTTCCTCCATGCCATCGTCGTAGTCCTTGTAGTTGGCATCCGCGGCCGCGTCGTCCATCACCTGGCTGGCATCGATGTTCCTACGAGTTCGGCCCTTCATGGAAGACATTATGGGGAGCGGGTGTATGACATCGCCGGGGGGGCCAGGAGGGCCAGGAGGGCCAGTTGTACCAGTCTCTCCCTTTGGTCCAGTT

Function

NR:

description
PREDICTED: collagen alpha-1(V) chain-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU240601 True 482 lncRNA 0.52 2 25696676 25697262

Neighbor

gene id symbol gene type direction distance location
LOC120545226 dab2ip,LOC102777858 coding upstream 263672 25276529 ~ 25433004 (+)
fibcd1b fibcd1,LOC103369860,LOC102776889 coding upstream 511541 25053517 ~ 25185135 (+)
ptger4b ptger4,LOC104959373 coding upstream 933788 24758670 ~ 24762888 (+)
ptges ptges coding upstream 1164717 24528667 ~ 24531959 (+)
usp20 usp20 coding upstream 1181070 24500231 ~ 24515606 (+)
agpat2 agpat2,LOC103360602,LOC103390057 coding downstream 209963 25907225 ~ 25928139 (+)
LOC120545451 NA coding downstream 272194 25969456 ~ 25972785 (+)
LOC120545450 NA coding downstream 285408 25982670 ~ 25986678 (+)
LOC120545449 LOC104943206,LOC100700751,LOC102783804,LOC103374055,LOC102290254,LOC101481254,LOC102208360 coding downstream 285419 25982681 ~ 25993176 (+)
gfm2 gfm2,LOC102784364 coding downstream 300658 25997920 ~ 26005107 (+)
G177714 NA non-coding upstream 166722 25529711 ~ 25529954 (+)
G177711 NA non-coding upstream 183234 25513018 ~ 25513442 (+)
G177681 NA non-coding upstream 183724 25509319 ~ 25512952 (+)
G177651 NA non-coding upstream 492189 25204255 ~ 25204487 (+)
G177645 NA non-coding upstream 508045 25187680 ~ 25188631 (+)
G177748 NA non-coding downstream 10685 25707947 ~ 25710600 (+)
G177751 LOC103360605,LOC101079510 non-coding downstream 32411 25729673 ~ 25733004 (+)
LOC120545910 NA non-coding downstream 115206 25812468 ~ 25813235 (+)
G177760 NA non-coding downstream 128481 25825743 ~ 25825989 (+)
G177769 NA non-coding downstream 231035 25928297 ~ 25930284 (+)
G177715 NA other upstream 162987 25533132 ~ 25533689 (+)
zgc:63972 cuta,LOC103373665 other upstream 391644 25245562 ~ 25305032 (+)
G177596 map1b other upstream 985035 24702971 ~ 24711641 (+)
dnlz dnlz,LOC104941974 other upstream 1539055 24155385 ~ 24157621 (+)
LOC120546141 NA other upstream 1970624 23725974 ~ 23726052 (+)
G177759 NA other downstream 132456 25829718 ~ 25849122 (+)
G177809 hexb,LOC102784651 other downstream 320902 26018164 ~ 26021831 (+)
G177848 btf3,LOC104954705,LOC107080991 other downstream 522219 26219481 ~ 26244891 (+)
LOC120545651 mol1a,LOC100706667,LOC102220180,LOC105027268,LOC103353284,LOC106562938,LOC103389989 other downstream 639045 26336307 ~ 26412013 (+)
LOC120546038 NA other downstream 889385 26586647 ~ 26614959 (+)

Expression


Co-expression Network