pdcl


Basic Information

Item Value
gene id pdcl
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 23730918 ~ 23747392 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039780498.1
TGGAAACTTAAGGGTTAAGCAACTATTTCCAAGGCCCGCTGCAGCGTAATTCTCTGTATTTTGACTTatcatttttataaataaatcttTGTGTTAACCTTTAATTTGGACCAAGCCTCTCCTTCTTCAGAGATTCTGAAACACGTAAATTCTCTACAGTCTCCGTCCCACCTTTTTTTACGTGTGACGGCAGGTAAAGGCGCAGTGCGGCGGGGCTGCAGCACTCTCAGATAGGAGTTAACCTGCTGGATTtctggtcctgctgcactctgatgctctcactctctgtctatCGACAActggctctcctcctcctcctcctcctcacaacCCTCTGAAACCAGCCCCCGGATATTTTCTTTCGGACACTTTTCTTAGAGTTTCATGAGTTGGAATAGAATTTGTCCTGAAGTGAGGCTGCTGGAATGAAATCTTCTGTCCTAGGATCAGTTTGTGCTCTGCTCCTGCTGTTGCGGGTGCCTGCATGCCGGGGTGATGAGGTTACTTCCAACACAGGAATGCTGAGCtatgaaaggggagagcgaggggggaagacatgcaagaaaaccgtcacagTGAACCCATGCTGTTATTTCCCCTGTCAGcactggggtgtgtgtgtgagatatggTGAGGACAAGTACGAATGTGACTGCACTCGTACCGGCTACAGCGGAGAAAACTGCACTGTCCCGGAGTTttggaccagagtcagtcagcttTTCAAGCCCAGCCCAGATGTGGTGCATTACACACTCACCCATTTCCACTGGCTCTGGGACATCATCAACTACACCTTCCTACGGGATGTCCTAATGCGGCTGGTTCTAACAGtGAGGTCTACCTTAATACCGAATCCTCCGACCTTCAACTCAAAGTATGGCTACCTCAGCTGGGAATCCTACCATAATCTGAGCTACTACACTCGGCTTCTGCCCCCAGTGCCAGAGGACTGCCCTACACCTCTGGGGGTCAAAGGCAAGGCTGGGCTGCCTGACCCTGAGCTGCTGGTTGAGAGGCTGCTGAAGAGAAGGACGTTCAGACCCGACCCCCAGGGCTCCAACCTCATGTTTGCCTTCTTCGCACAGCACTTCACCCACCAGTTCTTTAAGACCTACAATCGCATGGGTCTGGGCTTCACGAAGGCTCTATCGCATGGGGTGGATGCAGGGCACGTTTATGGAGACAACCTGAAACGTCAGCTCCACCTCAGGCTTCACAAAGATGGAAAACTCAAGTATCAGTTAGTTGACGGCGAGATGTTCCCTCCTTCTGTAGCTGATGCACCCGTTAGGATGAGCTACCCTGCTGGGATCCCTCTAAAGCGTCAGATGGCTATTGGTCAGGAAGTGTTTGGACTCCTCCCCGGTTTGGGAATGTTCGCCACGCTGTGGCTGAGGGAGCATAACCGAGTATGTGACATCCTGAAGGCAGAGCATCCCACCTGGGATGATGAGCAGCTTTTCCAGACCTCACGCCTCATCATCATTGGTGAGACAATAAAAATAGTGATAGAGGAATACGTGCAGCACCTCAGTGGATACCTGCTGCAGTTGAAATTTGATCCCACCCTGCTGTTTAACTCCAACTTCCAGTATGGGAACCGAATTTCTCTGGAGTTCAGCCAGCTCTACCACTGGCACCCTTTGATGCCTAACAGCTTCTTTATTAACAGAGATGAACTGGCATACTCACAGTTCATTTTCAACACTTCTGTTCTCACAAACTACGGCATTGAGAAGCTGGTGGATGCCTTCTCTCGGCAAGTCGCTGGCCAGATTGGCGGTGGCCATAACATCAATGCTGCCGTGACCAATGTGGCTGTGAGGACCATAAAGGAGTCCCGCCAACTCCGCATGCAGCCCTTCAACCAGTACAGGAAGCGTTTTAACCTCAAGCCATACACATCGTTTAGACAATTCACTGATAACGAGGAGATAGCGCGCGAGCTTGAAGAATTCTACGGTGACATTGATGCTCTTGAATTTTATCCTGGTTTGCTGTTGGAGAAAACACGAGAGGGGGCCATATTTGGAGAGAGCATGGTGGAGATGGGTGCTCCCTTCTCCCTTAAAGGCCTCATGGGAAACCCCATATGTTCTCCAGGCTACTGGAAGCCCAGCACCTTTGGAGGCAAAGTCGGCTTTGACATAGTAAACTCTGCCACACTGAAGAAGCTGGTCTGTCTGAACACCAGGACGTGTCCTTATGTGGCGTTTAAAGTACCAACAAAGCAGCAATCACAAAGAGGAAATGATGACAGTAAAGTAAGGACTGATGAGCTATGCATCATATTCCAGGAGAGTGGTTTGCTGCAGCTAAAGGAGCTAAACCAGCAGATTAACTGGATTGAGAGCAGTTGGGAGTTGGTGATATTTTTAACGGTAGCTGGTCAGAAATCAAGAGCCATGACGACTTTAGATGACAAGATTCTCGGAGAGAAGCTGCAGTACTACTATAGCAGCAGTGAGGATGAAGGCAGCGACAACGAGGATGAGGATGGGGAGAACAAGACCATCAGGGACGCTAGCGTCACTGAGCCTGAGATAGACTACAGCGCCGATGGAAGTGCTGTCAACACAGGACCAAAGGGTGTCATCAATGACTGGAGGAAGTACAAGCAGCTGGAGGTGGAGCAGAAACAAGAGCAGaaaagagagatggaaagaCTGATCAAGAAGCTGTCGATGACCTGCCGCTCAGACCTCGACctggaaaaagacaaagagaaacagaaagataTGCAGGACAAAATCAAAGGAAAAATGACCATGCAAGAGTACAACATGCTCCAGGAAGAAGAGGATGACGAAGACTTCCTCCAGCATTACCGTCTGCAGCGCATTGAAGAGATGCGGCGCCAGCTCTGCCGTGGCAAACGCTTTGCGCAGGTCTACGAGCTTAACAGCGGAGAGGACTTCCTGGAGGCTTTGGACAGGGAGGACCAAAGCACGCTGGTCATGATCCACATCTACGAGCCGGACGTCCCGGGCTGTGAGGCCATGAGAGGCAGTCTGATGTGTCTGGCTCAGGAATACCCGCTGGTCAAGTTCTGCAGCGTACGCAGCTCGGCCATCAGCACCAGTGCGCTGTTCAAGGAAAGTGCTCTGCCTGCTCTGCTTGTTTACAAAGGAGGGGACCTGATCGGCAACTTTGTGCGGGTCACAGACCAGCTCGGCGAAGACTTCTTTGCTGTAGACCTGGAGGCCCTTCTGCAGGAGTACGGCCTGCTGCCTGACAAGGCCCGCATCGTCCCGAAGACGGTTCGCAATGGAGCGATCGTACAGAACACTGTGAGCGATGAAGACTCCGACCTTGATATAGACTAGAGCCATAATATCTAACATGCATTATGCTTGGGGAAACATGCGTACACAGTCTGCATGGACTATAGAtcattttttatgtgtgtggcCCCCCGTAGCGATGAGGGACTGAGCCAGGATTGCATTGAAGCAAGTTAATGCACACAAAACATCATGGCCCTGTGAGTTTTATCATGACCGCAATCTATAGTAAACATaagttgttattattaataaaagtacatttttttttttgccattaatAATATCGAGGACCTGTTATGCACAGTGAGAATGATGTAGATGTTaggtgaaatgttttgtttgagCTGTGACTGTCAACTATTTATTCGTTGTGTAAGAACACATTCCCTGTTTTTGTTTCTCGTGCGTCTTCATCGTATTAAATGTGTTTCACTCTGTAGAATACGAATCCTGCAGCCCAAACTTACTTGTAGTTAATTTTATAACTTTTATATGTGCTGTACCATTTCAAATAGTGGGAAGAATAAACAAATGTTTGGACTCA

Function

NR:

description
phosducin-like protein

GO:

id name namespace
GO:0006979 response to oxidative stress biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0004601 peroxidase activity molecular_function
GO:0020037 heme binding molecular_function

KEGG:

id description
K00509 PTGS1, COX1; prostaglandin-endoperoxide synthase 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039780498.1 True 3834 mRNA 0.49 16 23730918 23747392

Neighbor

gene id symbol gene type direction distance location
rnf165a rnf165,LOC103473450,LOC102207811,LOC100695851 coding upstream 68713 23651723 ~ 23662205 (+)
c17h18orf25 clg7h18orf25,LOC102291905,LOC103357989,LOC101477080 coding upstream 84699 23638215 ~ 23646219 (+)
hwa NA coding upstream 99746 23628344 ~ 23631172 (+)
zgc:122979 LOC103357987 coding upstream 102838 23624110 ~ 23628080 (+)
LOC120545389 LOC103357986 coding upstream 111741 23611737 ~ 23619177 (+)
LOC120545180 LOC103357997,LOC101480866,LOC102079280,LOC106633087,LOC102787376,LOC102204442 coding downstream 7343 23754735 ~ 23757305 (+)
notch1a LOC104924495,LOC103357999 coding downstream 42490 23789882 ~ 23813730 (+)
LOC120545788 NA coding downstream 67929 23815321 ~ 23840033 (+)
LOC120545057 LOC104952880,LOC103371326 coding downstream 141512 23888904 ~ 23889986 (+)
col27a1a LOC104924507,LOC103371324 coding downstream 242403 23989795 ~ 24063047 (+)
G177284 NA non-coding upstream 11545 23673262 ~ 23719373 (+)
G177244 NA non-coding upstream 194520 23535883 ~ 23536398 (+)
G177177 NA non-coding upstream 304016 23424844 ~ 23426902 (+)
LOC120545237 NA non-coding upstream 383525 23336307 ~ 23347393 (+)
G177170 golph3,LOC103364537,LOC106962713 non-coding upstream 395341 23331898 ~ 23335577 (+)
LOC120545825 NA non-coding downstream 187455 23934847 ~ 23935801 (+)
LOC120545826 NA non-coding downstream 188609 23936001 ~ 23936681 (+)
LOC120545017 NA non-coding downstream 221865 23969257 ~ 23971641 (+)
G177452 NA non-coding downstream 392026 24139418 ~ 24150168 (+)
G177487 NA non-coding downstream 653093 24400485 ~ 24400891 (+)
rpl37 rpl37 other upstream 3676 23723478 ~ 23727242 (+)
LOC120546141 NA other upstream 4866 23725974 ~ 23726052 (+)
LOC120546142 NA other upstream 6673 23724166 ~ 23724245 (+)
hnrpkl LOC103364541,LOC100706673,LOC103155138,LOC103473466 other upstream 272313 23440983 ~ 23458605 (+)
G177094 NA other upstream 546656 23182673 ~ 23184262 (+)
dnlz dnlz,LOC104941974 other downstream 407993 24155385 ~ 24157621 (+)
G177596 map1b other downstream 955579 24702971 ~ 24711641 (+)
zgc:63972 cuta,LOC103373665 other downstream 1498170 25245562 ~ 25305032 (+)
G177715 NA other downstream 1785740 25533132 ~ 25533689 (+)
G177759 NA other downstream 2082326 25829718 ~ 25849122 (+)

Expression


Co-expression Network