LOC120545057 (LOC104952880,LOC103371326)


Basic Information

Item Value
gene id LOC120545057
gene name LOC104952880,LOC103371326
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 23888904 ~ 23889986 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039779038.1
ATGCTCCAGTGCTCTCCATGCAAACTGCGTACCCACCAGTGGTGTTTCCTCCTCTTCAACGTCCTCCTCTTCCATGCCCTGCTGTTTGGGGCAGACTTTGTCGAGGAGTACCTCCTGCAGCCCACACCTGGGGTCTACACTGATGGCTTGGTTGTTGATGTAAGAGAGAAAGCAAGGAAACTAGACCTGAGCAACGTCAGGGAGAATGTGTCCCTGGCCTACCCCATCACAAACCCTGATGCCTGCAGAAACTCTAACCTCTTCCTCCTTACTCTCGTCTTCAGCTCCACAGCTAATATCACCCAAAGAGATGCAGTCAGGAGGACATGGGCTAACCAAACGCTCATCCAAGGCTTCCCAATGCGGATACTGTTCTTCTTAGGATCAACAGAGACTTCCGCTGCACAAAAGGCCCTCATGATAGAGTCTGACCTCCATGGGGACATGGTCCAGGGTCATGCTGTGTCTGACTCGTCCCTCCGTGGCCCAACAGAAAGGACAGTGCTGGCGCTGCGCTGGGTGATTGCCTTCTGTCCCGTGGCAAGATTTGTTCTGCTGACTAAGGACTCTGTGTTTATCAACCTTCCTGCAATCGGAGGCTACCTACTCGGGCTGCACAGGCACCCTGAGGACCTTTATTTAGGTAGGGTGATCCAGAGAGACTCCCCTGACAGGGACCCCAACAGTCCTGGTTTCTTACCCCCAGCACTCTACCCTGACAAGTACCTGCCTGAATACTGTGAAGGGACGGCTTATGTTATATCCCAGGATGTGGTCCGAAAAGTGTATGTTGCCTCTGCAGCAGTTCGTGCACCTGTGCCAGCTGATGTTTTTGTGGGCCTTTGTGCTCAGAAGGCTGGTGTGGCACCAACCCACAGTAGCAGGTTCTCAGGAGAGAAACATATCCGCTACAACGCCTGCTGTTACCGCTATCAATTCAGCTCAGCAGGAATGGAAAGCCATGAACTAGATATAGTGTGGGCAGACCTGGGACAGAAGGGTGAACAATGCTCACTGTTAAAGACCTACTATGGCCTGGTGACCTGCAAAGCCCTGACGTACCTGGATAAACTGTCCTTCTAG

Function

NR:

description
PREDICTED: putative UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase LOC100288842, partial

GO:

id name namespace
GO:0006486 protein glycosylation biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008378 galactosyltransferase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039779038.1 True 1083 mRNA 0.53 1 23888904 23889986

Neighbor

gene id symbol gene type direction distance location
LOC120545788 NA coding upstream 48871 23815321 ~ 23840033 (+)
notch1a LOC104924495,LOC103357999 coding upstream 75174 23789882 ~ 23813730 (+)
LOC120545180 LOC103357997,LOC101480866,LOC102079280,LOC106633087,LOC102787376,LOC102204442 coding upstream 131599 23754735 ~ 23757305 (+)
pdcl NA coding upstream 141512 23730918 ~ 23747392 (+)
rnf165a rnf165,LOC103473450,LOC102207811,LOC100695851 coding upstream 226699 23651723 ~ 23662205 (+)
col27a1a LOC104924507,LOC103371324 coding downstream 99809 23989795 ~ 24063047 (+)
cdk5rap2 cdk5rap2 coding downstream 174956 24064942 ~ 24110814 (+)
dolk dolk coding downstream 238924 24128910 ~ 24131539 (+)
uck1 uck1 coding downstream 267700 24157686 ~ 24161621 (+)
LOC120545253 LOC103390093 coding downstream 433983 24323969 ~ 24394568 (+)
G177284 NA non-coding upstream 169531 23673262 ~ 23719373 (+)
G177244 NA non-coding upstream 352506 23535883 ~ 23536398 (+)
G177177 NA non-coding upstream 462002 23424844 ~ 23426902 (+)
LOC120545237 NA non-coding upstream 541511 23336307 ~ 23347393 (+)
G177170 golph3,LOC103364537,LOC106962713 non-coding upstream 553327 23331898 ~ 23335577 (+)
LOC120545825 NA non-coding downstream 44861 23934847 ~ 23935801 (+)
LOC120545826 NA non-coding downstream 46015 23936001 ~ 23936681 (+)
LOC120545017 NA non-coding downstream 79271 23969257 ~ 23971641 (+)
G177452 NA non-coding downstream 249432 24139418 ~ 24150168 (+)
G177487 NA non-coding downstream 510499 24400485 ~ 24400891 (+)
rpl37 rpl37 other upstream 161662 23723478 ~ 23727242 (+)
LOC120546141 NA other upstream 162852 23725974 ~ 23726052 (+)
LOC120546142 NA other upstream 164659 23724166 ~ 23724245 (+)
hnrpkl LOC103364541,LOC100706673,LOC103155138,LOC103473466 other upstream 430299 23440983 ~ 23458605 (+)
G177094 NA other upstream 704642 23182673 ~ 23184262 (+)
dnlz dnlz,LOC104941974 other downstream 265399 24155385 ~ 24157621 (+)
G177596 map1b other downstream 812985 24702971 ~ 24711641 (+)
zgc:63972 cuta,LOC103373665 other downstream 1355576 25245562 ~ 25305032 (+)
G177715 NA other downstream 1643146 25533132 ~ 25533689 (+)
G177759 NA other downstream 1939732 25829718 ~ 25849122 (+)

Expression


Co-expression Network