RNA id: TU242116


Basic Information

Item Value
RNA id TU242116
length 2281
lncRNA type sense_over
GC content 0.39
exon number 2
gene id G178854
representative True

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 29839836 ~ 30106722 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tcatgaaaataaaaaggaaacgcattgaatgagaaggtgtgtccaaacttttggcctgtactgtatgtaaggagataacataggcacaggctaattactgatcactaacatgctagttaacattagtaattaaacctaatggaatagctaatggaagtccaaactgcctgtgagcttctcctgtactatacggtaattcctctactgtgtgacagtaagtctcgtggttatgacccaatcgttagcctattattataaaagcgtctgctacggagccataacgtgaggtacaaggtaatggagccttttatacattgtcgtgtttctttagaactaaacaacggacaaatagagtctttaaacgcttcagatgtaaagttattcgctgtcaaagtggcgccaaaatgtatgctagttagtggaatgctaacgggaggtgatctctttgtagcgtcaaaatggcgccataggaggttcgagttctgaagcgaagcttacccccttggcaaCCACCGAGTACCCCgagctaaaaatccaacatggctgctccatGCAccaacagtagtgaaagctgtagtaacatacagttataagctcttctgtgttatttgtgtctcactaaatcagtcgtacagACGGCGCTGTCCATATTCTGTCTGTGGACCTGTTgctacgctgtttgtatgcacaaaaaagcTGCGTAATGCGTTGCTAACagtggctaacctggctagagctaatgaaaacaatgaaaatccgacttgtaaatggaacgcactagtTACCGTAGCTCCGTCTATATCTgctgtaaatcattttgtgactttgcagGAAAAATCGGACCGGGCAGAGgctttaataaaaactatattaaaactagcgttcttttcactgttagtcttgtttgctgttacaggtcatttatgatcatcagatggaaaatGACAGTTTCAAAAACATTacaaagttacatatagtcactttaattaATGAAGAATCTTCAGTTACATTTAGTTTAAGTActtttaaagtgttcatattatgctttttggctttttctcttttcctttattgtgttatatatcttttttgtgcatgttacaggtttacaaagtagaaaagcccaaagtccccccaaagggacttaccatctccaacagaaaacactgttcaccaactgctccaaacagctctgttgtagtccagcctttacttcagagacagacgtggtcactttggaacacacgttaaaatgctcgcctagctgctagcatggcacgccctcatactctgcttctgactggctagtagtccttacctagctactgtcaggacacgccctcatactctgcttctgactggctagtagtccttacctaggtactgtcagggcacgccctcatactctgcttctgactggctagtagtccttacctaggtactgtcagggcacgccctcatactctgcttctgactggctagtagtccttacctaggtactgtcagggcacgccctcatactctgctcctgactggctagtagtccttaaagatgtaacagaagtgagatgtctcactctgtagctaaaacagagagctcaacatacagggtgaaaagaggagctgcagcaatgtgcagtacaacaaatatatggtgttttttgaaaattaaaccatgtaaacctattctggtacaacctctaaatacaattattaacctgaaaatgagcagaatatgagcactttaatattcAGTCCAGTATAACACCGCTGCAAACTACAACCTCAGTACTACACATTTAACGCATTTCTGACAATTATAATCTTCCAAAACGTAGAAATTGTGGCAGATCTGTTGCAtcaacaaatggggttacgttgcATTGCTACCGTTGTAGAATAAAACCTATAAACGAGAAATTCTAAGAAAAATAGGAATAAATCTGTAAAAATATGTGCATTATACTTAAGTCAACAATATGCAGAAATAagaaatatgtcaaaaaatatgTGTACTACAATatataacagtgtaaataacagtaataatgctGACAAATGGGATCTATGTTAAGTATTAAGAGACGATAATAGTGTAAATAAGAATATTAGTTgacatgtatgttttaaatgtcGGTTATTGAGTTCTTgcacaaaatgatttattatatAAAATCATCAGTGGGGACAAAAGAGAGGGTGAGAAGTGGATgtgtaacattttaaattatcatCTAAAGTCTTATTAATttacaatacaaataaataaacctacaatgca

Function

GO:

id name namespace
GO:0044421 obsolete extracellular region part cellular_component
GO:0005576 extracellular region cellular_component
GO:0005615 extracellular space cellular_component

KEGG:

id description
ko04146 Peroxisome
ko04610 Complement and coagulation cascades
ko05150 Staphylococcus aureus infection

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU242123 lncRNA upstream 36153 29802297 ~ 29803683 (+) True G178858
TU242106 lncRNA upstream 49725 29772320 ~ 29790111 (+) True G178847
TU242107 lncRNA upstream 66671 29772651 ~ 29773165 (+) True G178848
TU242097 lncRNA upstream 89541 29742623 ~ 29750295 (+) False G178845
TU242111 lncRNA downstream 45404 29890345 ~ 29893184 (+) True G178851
TU242124 lncRNA downstream 80793 29925734 ~ 29995516 (+) True G178859
XR_005636694.1 lncRNA downstream 111329 29956270 ~ 29958389 (+) True LOC120545430
TU242150 lncRNA downstream 178090 30023031 ~ 30023479 (+) True G178882
TU242170 lncRNA downstream 243338 30088279 ~ 30183476 (+) False G178896
XM_039779735.1 mRNA upstream 44011 29793804 ~ 29795825 (+) True LOC120545429
XM_039779059.1 mRNA upstream 49168 29740432 ~ 29790668 (+) True zfyve16
XM_039779724.1 mRNA upstream 149528 29669572 ~ 29690308 (+) True ckmt2a
XM_039779725.1 mRNA upstream 149528 29669572 ~ 29690308 (+) False ckmt2a
XM_039779058.1 mRNA upstream 172605 29601531 ~ 29667231 (+) True rasgrf2a
XM_039779060.1 mRNA downstream 1412 29846353 ~ 29882921 (+) True LOC120545067
XM_039779699.1 mRNA downstream 50736 29895677 ~ 29925265 (+) True LOC120545406
XM_039779729.1 mRNA downstream 106511 29951452 ~ 29965248 (+) True il1b
XM_039779706.1 mRNA downstream 216659 30061600 ~ 30088020 (+) True gnsb
XM_039779726.1 mRNA downstream 263833 30108774 ~ 30115546 (+) True nudcd3
TU242091 other upstream 44522 29794144 ~ 29795314 (+) False LOC120545429
TU242100 other upstream 95761 29742623 ~ 29744075 (+) True G178845
TU241682 other upstream 747510 29084949 ~ 29092326 (+) True G178529
TU241633 other upstream 894392 28944507 ~ 28945444 (+) True G178506
XR_005636601.1 other upstream 1251810 28580268 ~ 28588026 (+) False LOC120544907
TU242148 other downstream 176378 30021319 ~ 30022217 (+) True G178881
TU242149 other downstream 176378 30021319 ~ 30022217 (+) False G178881
XR_005636691.1 other downstream 419442 30264383 ~ 30310894 (+) True zmiz2
TU242927 other downstream 1542806 31387747 ~ 31480094 (+) True G179407
TU243294 other downstream 2234236 32079177 ~ 32099542 (+) True G179655

Expression Profile