RNA id: XM_039779059.1


Basic Information

Item Value
RNA id XM_039779059.1
length 4500
RNA type mRNA
GC content 0.58
exon number 16
gene id zfyve16
representative True

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 29740432 ~ 29790668 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTCACGTGGTATTTCCTCATTCGATACGAGCTCCGAAACCGACCGAGAGCTGCACAGAAGTGAACCGTGAAACAAGCGTCGGATCCTCGGTCCCATCCGCCCATCTGTGTGGCTCCTCAACACTGTGGCTCAAGGGCTAAAAGGCAGAGCAGATCCTGTGACCTCCCGGCTGTTTGTCTGTTCAAGATGGCCGCTTGAGTGGGGAATTTACACACATCTCTCCAATAAAACTAATCCAACAGCTAGCTTAGCTTGCCACCCAACTTTCACTGCCTTATCAGAGAATGAGACGACGATACGGGCGACGTTTGTTCCGATTTTAAAACGGATCATGAGCTCAGTTGTTGAGGAGGACGTCGGAGTTATGGAATAAAACAAGTGCTGgAATTGGAGGGGGTTAAGGGCCCTTTGTTTCAGCCCAGCATGGACAGCTTCTTCAAGGCAGCTGTATGTGATCTGGACAAACTGCTTGATGACTTTGAACTCAACACTGAGGAACTAGAGTGCAAATCTGTTTTCCTGAAGCCTTCTGTGTACCCCTTCTCCTCGCTGGGCTCTCAGTGTTTGTCCTCCGAGGCGTCCACTGTCCCGCCAAACCTCCCCGACCTTAACTCGCTTCATTACGGTTCTGCCACCGGCTGTCCCGACCGCTCCGGCGGTCAAAACCGCGGCGCGGATGACcgagaggtcaaaggtcagcctCTAACGGGAGTGgaccttctctcctctgtggatCGCAGGCCGGCTCAAAGCTCCGCCCCTCCCTGCCCCGACCGAGCTCTGAAGCCGGTGTGCGACCTGGTGAACGACACGAGCTCGGCCATCTTGGTCAGGGCCAACAGCCACGATGCTTTCGGCGAGATGGACGTGGTGGAGAAGCAaatggaggaggaagtggaggaggaggaggaggaggaagagacgCTGCTCGTGGACTTTGACAGCCCTGTGATCGCCGTGCGCGGAGAGGAGCTGGGGCGGCCGAGCCAAAGCTCTGGCTGCGGCGCCGAAAAGGAAGAACAGGCCTCTGCGGGGAAAGGCGAGCTGCTGGGTTTAGATTCCCACGAGCGGGGCGGCGAATACTCTGCGTCGCTCAGTCTGCTGGACGTCATTCTTTCCGCTGCGGTGGAGAGGAGCTGCGAGCCCGCGGACGATTCGCCGCCGCCAAGCACCGGCGAGCGGgcggagaaagaggagagggacGGTGAGGAGGCGGTCTGCACGAACCAAGTGCCGGGTGGCTCTTTAGAGCGCTGCGAAGGGGCCGCGCTGACAGCAGACGGCATTaaagacacaacaacaacaacaacaaccacctcAGAGAATAAAGAGGACGAGCCGCAAGAAGCCTCCGATCAGCGTGAGGCGGAGTCTCCCGTCGGTTTAAAGTCGGGGGCTTCGGAGAGCAAACCGGCCGGCTTATCGTGCCTGCCGATGGCCGTTTCCATGTGCGGCGCGCTGCTGAACACGGAGACGATGGAGGATGAGTCGGGGCGAGCCGCAGAGCAGTGTGGCGAGGCAGCAGATGTCTCTGAGAGCACAGAGGCAGACGCGCAAGCCAGGGAGGACCGGTCCGGTTCAGAGGAACGCGTTGACCCGCCGGCGTCTGCGTCCCAGCAGGTCGCGGAGGGCAGGGGGTCCCCAGAGGGTCAGCATCTCGCTCTGGGACCCGTCCCCGCTGCAGACCTCGCCTCCCGCGAACGCTCGGAGCCCAGCCCGGTCGACCCGCCCGAGTTCGGCTTTGAATATCTGCCCGAGAGCGACCAGGCCGAGCTGCTGGTCACGGACGAGGAGCTGGACGCGTTCCTGCAGGCGCACACGGAAGCAGAGCAAAGTAGGGGCGTCTCTCACTGCGGCGGCTCGCGAGATTTCACCCAACCGGAGAGTCTCTCGGAGGCGAACGGAGATCCGGAGGGCAGGCTCGCGGGCGACGAGCCGAGGAGCCGCGGTCGAGGTAGACGGGAGGATCTGGAGCGTCTGGCTTCTCCAGAAAGCGACCGAACAATGTGCGTGTCCGTAGAGGGAAGTTTTAACCCCAGTGCTCCGTCACAGGACTCTTGCAGACCTCCTTGCCAAGAAGAGCCAGAACTCTCCTCCGGGGTAAGCCATTCTTCGACCAGCAACACTTTCCAGTCCCAGCACAGCAGTAGCCCCGACCAGCCGCCCTCCTATGGAGGCGCAAGACCTAAACAGCTACACTGCCACATCGCTAGATCTCCGCCAGCAGGGGAAGACGGAGAGGAGCAGGCTCAGACGCTCGGTACGGCTGAGAATGAAGAAGAAAGTTCACCCACAAGTCTTACAGAGGAGCATTCCAACATCAGGGATTTGAGCCCTATGTACGCCTCTCAGGAGCATCAGGATTACAGCCCGGGGTATGATGAACTCTCAGAGCCCCCGCCGTACCCCGGGGACTCGCCCACAGATGGTGCCCGGTCTGTGAACTGGAAGAGGGAGGGAGCGGAGGAGCTGGGGAGCAGACAGCCTGCCTGGGTACCAGACTCCGAAGCTCCCAACTGTATGAACTGCTACCAGAGGTTCACTTTCACCAAGAGGCGGCATCACTGTCGAGCCTGCGGGAAGGTGTACTGTGCGGTGTGCTGCAACAGGAAGTGTAAGCTGAAGTACCTGGAGAAAGAGGCccgtgtgtgtgtcgtctgctTTGATACCATACACCGAGCCCAGGCCCTGGAGCGGATGATGAGTCCTGCGGGTCCCAGTCCGAACCCCAACGTCCCGTCTGAGTACTGCAGCACCATCCCCCCTCTGCAGCAGGCTCGAGCCGCCGGCACTCTCAACTCTCCTCCACCGACCGTCATGGTGCCTGTGTCCGTTCTCAAACACCCAAACAACGACGGTTGTCCTCGTGAACATAAGCGCGTGTGGTTCGCTGACGGCATCTTGCCCAACGGAGAGGTCGCGGACACAACCAAGCTGTCGGTGACGAGCCGCCGCAGCTCCCAGGAGTTCAGTGCCGTCTCTCCAGACCAAACGACGCCTGGGTCAGAGGTTGGAGTCGGCTCCTCGGCCCCCGAAGCGTCTGTGGCTGCGGAGGTGGTCCGACCTCCGGTGTCCGGACCCTGGGACTACGCCCTGCTCTCTGGAGTCGGTACTTCTGTGAAGAGGGTTCCCAGTCTGCTGCCAGATAACGACGATGAGCTCCCTCCTCTGCTCATCACCACCGGAGAGGAGGAAGCGGGAGATGTCTTGGTTGAGGAGAGCCCGGCCCCGTGCCAGATCCTGCACCTATTGGAGGAAGGAGGACCTCGACCGCTGACGTTTGTTCTCAACGCCAACCTGCTGGTCAACGTCAAACTAGTTTCATACGGCGCTCGGCAGTGTTGGTGTTTTGGCTCCAACGGGCTGCAGGCTCTGGGACAGAGAGAGCTGGTGTTTCTGTTGGAGTGTTTGCCGGAAGAAAAAACTCTTCCAAAAGACCTCTTCACACTCTATCTCAACATTTACCAAGAAGCCCAAAAAGGGAAGTTGGTGGAGGAGCTGGATAACGTGACGTTCACCAGCAGCTTCCTGGGCAGTAAGGACCACGCGGGGatgctcttcttctctcccAGCTGTCAGCCTCTCGATGGCCTCACGCTCCCACCGCAGCCTTTCATGTTCGGCGTGCTCGTCCAGAAGCTGGAGGTGCCCTGGGCCAAAGTCTTTCCGCTCCGACTGCTTCTACGGCTTGGAGCCGAATACAGCGtgtATCCCACTACATTGACGAGTGTCCGTTTTCGGGACTCTGTGTATCGAGAGACGGGACACACCATAATGAATTTACTGGCTgACCTGAGGAACTACCAGTACAGTCTGTCAATTGTGGAGGGTCTGAGGATCCACATGGAGATGGGTCACAGCTACATCGACATCCCGAAATGTAGCTTCAATGAGATGCAGAAGGTGGTAAACGCGTCCAACGAGCACGTTATCAGTATCGGAGCACGTTTCAGCTCGGAGGCCGACTCTCACCTGGTGTGTTTCCAGAACGAGGAGGGAAACTATCAGACGCAGGCCAACAGCAAGCCGGGGAAGACCCGCACAGtGACTGGGGCCAGTTTTGTGGTGTTCAACGGGGCCCTGAAAGCCTCGTCAGGCTTCATCGCAAAGTCCAGCATTGTTGAAGatgGGCTGATGGTGCAAATCCCCCCAGAGACCATGGAGTCTCTGCGCACCGCCCTGAGGGAGCAGACGGACTTCCTCATACCCTGCGGCAGGAACGATGGCAGCGAGCTCCGAGAAAACGTCACTGTCCGCTGGGTCGACCTGAGCGCTCCGGTCAACGCAGGGTACACATTCACACAACTGTTTACACACTGTTGTGCGGTCTGTGCACGACTATTATACCACACACTCTGTAATCCAGCCGGCAGTGGCGAAaatgtaactgagtacatttaccCAAGTCCTGTACTTAACTACACATGTGAGGTACTTggactttacttgagtcttttctttttatgccactttctacttctactccactacattaTGTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU242082 lncRNA upstream 38593 29692438 ~ 29701839 (+) True G178835
TU241973 lncRNA upstream 73224 29666778 ~ 29667208 (+) False rasgrf2a
TU241959 lncRNA upstream 195691 29544159 ~ 29544741 (+) True G178728
TU241945 lncRNA upstream 209073 29528425 ~ 29531359 (+) True G178725
TU241920 lncRNA upstream 281896 29445053 ~ 29458536 (+) True G178710
TU242123 lncRNA downstream 11629 29802297 ~ 29803683 (+) True G178858
TU242116 lncRNA downstream 49168 29839836 ~ 29844941 (+) True G178854
TU242118 lncRNA downstream 51998 29842666 ~ 30106722 (+) False G178854
TU242111 lncRNA downstream 99677 29890345 ~ 29893184 (+) True G178851
TU242124 lncRNA downstream 135066 29925734 ~ 29995516 (+) True G178859
XM_039779724.1 mRNA upstream 50124 29669572 ~ 29690308 (+) True ckmt2a
XM_039779725.1 mRNA upstream 50124 29669572 ~ 29690308 (+) False ckmt2a
XM_039779058.1 mRNA upstream 73201 29601531 ~ 29667231 (+) True rasgrf2a
XM_039778902.1 mRNA upstream 152792 29584043 ~ 29587640 (+) True LOC120544985
XM_039780776.1 mRNA upstream 172183 29553358 ~ 29568249 (+) True oclna
XM_039779735.1 mRNA downstream 3136 29793804 ~ 29795825 (+) True LOC120545429
XM_039779722.1 mRNA downstream 40695 29831363 ~ 29841705 (+) True sec14l7
XM_039779060.1 mRNA downstream 55685 29846353 ~ 29882921 (+) True LOC120545067
XM_039779699.1 mRNA downstream 105009 29895677 ~ 29925265 (+) True LOC120545406
XM_039779729.1 mRNA downstream 160784 29951452 ~ 29965248 (+) True il1b
TU241682 other upstream 648106 29084949 ~ 29092326 (+) True G178529
TU241633 other upstream 794988 28944507 ~ 28945444 (+) True G178506
XR_005636601.1 other upstream 1152406 28580268 ~ 28588026 (+) False LOC120544907
XR_005636773.1 other upstream 2042500 27656536 ~ 27697932 (+) False lhfpl2a
TU241015 other upstream 2729037 27010197 ~ 27011395 (+) False nln
TU242091 other downstream 3476 29794144 ~ 29795314 (+) False LOC120545429
TU242148 other downstream 230651 30021319 ~ 30022217 (+) True G178881
TU242149 other downstream 230651 30021319 ~ 30022217 (+) False G178881
XR_005636691.1 other downstream 473715 30264383 ~ 30310894 (+) True zmiz2
TU242927 other downstream 1597079 31387747 ~ 31480094 (+) True G179407

Expression Profile